Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0511 |
Symbol | |
ID | 5612303 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 627002 |
End bp | 628204 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640931356 |
Product | putative tyrosine-specific transport protein |
Protein accession | YP_001472252 |
Protein GI | 157373652 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0814] Amino acid permeases |
TIGRFAM ID | [TIGR00837] aromatic amino acid transport protein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAAA GTAAAATCTT CGGTAGCATG CTCATAATTG CCGGCACGAC CATAGGTGCG GGTATGTTAG CCCTGCCTCT TGCCTCCTCG GGTCTGGGCT TCGGTGTCGC GAGTATTATT ATGCTGCTCA TCTGGTCTCT TATGACCTAT ACCGCATTGC TGATGATCGA AGTGCACCAA TTTGCCCCCG CCGATGCGAC CCTACACACC TTGGCGTATA AACTGCTGGG CCGAAAAGGG CAGCTCATTG CCAGTTTCTC GATGATGTTT CTGTTTTATG CGTTATGTGC GGCCTATATC GCCGGTGGCG GTGAGCAGAT CCATAGTAAG CTCACAAGCT GGTTTGAGCT GGATATCCCT ATGCAGTTGG GGGCGATACT CTTCACTGTG TTAATTGGTA CTGTTGTGGC GATTGGTACT CGCTCTGTCG ATATGATTAA CCGCAGCTTA TTTTCCTTGA AGTTAATTGC CTTAGTCTTG ATGTTGTTCC TGCTTTTGCC TCACGTGTCT GTCGATAACT TAGTGGCGCT GCCTGTGCAT CAAGGGCTCG TATTAGCCTC ATTGCCTGTG ATTTTCACCT CGTTTGGTTT TCATGGTTCT ATTCCATCTA TCGTGCGTTA CTTAGGGAAG GATACTAAGG CATTGAGGTG GATCATTGTG GTGGGATCGG CACTGCCGCT GGCGGTTTAC CTCTTATGGA TGCTGGCCAG TCAGGGGGTT CTGACACAAG GTGATTTAAT GGGGAGTCAA AGCCTCAATG GGTTCATCGG CTCTCTGAGC CGCCTGCTGC ATGACCCTAT GATAGCGAAC ACGGTATCGA TATTTGCCGA TCTCGCTCTG GCTACCTCAT TTCTTGGTGT CAGTTTAGGC TTATATGACT TTATTGCAGA CCTGTTGAAG CGCAGCACTA AGCCGAGCCA TAGAGTTCAG GTCGCCCTGG TGACATTTAT GCCGCCATTG GGATTTGCGA TGTTTTACCC TCAAGGGTTT ATCGCAGCTT TAGGCTACGC GGCATTTGCG TTAGTGGTAC TGGCGATCTT CCTTCCGGTG GCTATGGTAT CGACTCAGCG CAGACAAGTC GGGTTAGGTG GCTACCGCGT TAGGGGCGGA GCATTGGGAC TCGGATTAGT GACCTTAGCC GGTATTTTAA TCATGACGGT GCAATTGTTG CAGATGTTTG ATGCTTTGCC TGCTGTCGGC TAG
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Protein sequence | MNKSKIFGSM LIIAGTTIGA GMLALPLASS GLGFGVASII MLLIWSLMTY TALLMIEVHQ FAPADATLHT LAYKLLGRKG QLIASFSMMF LFYALCAAYI AGGGEQIHSK LTSWFELDIP MQLGAILFTV LIGTVVAIGT RSVDMINRSL FSLKLIALVL MLFLLLPHVS VDNLVALPVH QGLVLASLPV IFTSFGFHGS IPSIVRYLGK DTKALRWIIV VGSALPLAVY LLWMLASQGV LTQGDLMGSQ SLNGFIGSLS RLLHDPMIAN TVSIFADLAL ATSFLGVSLG LYDFIADLLK RSTKPSHRVQ VALVTFMPPL GFAMFYPQGF IAALGYAAFA LVVLAIFLPV AMVSTQRRQV GLGGYRVRGG ALGLGLVTLA GILIMTVQLL QMFDALPAVG
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