| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0505 |
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| Symbol | |
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| ID | 5613920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 619832 |
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| End bp | 621313 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931350 |
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| Product | UbiD family decarboxylase |
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| Protein accession | YP_001472246 |
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| Protein GI | 157373646 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTA AGGATTTACG CAGTTTTATA AGCCACCTGG AAGCGAATGG TGAACTTAAA
CGTATCAGCC ATCCGGTCGA TCCCCATCTT GAGATGACAG AGATCGCCGA TCGTGTGTTG
CGCGCCAAGG GCCCTGCTCT GCTGTTTGAA AATCCGGTTG GCAACGAGAT GCCGGTATTG
GCAAACTTGT TTGGCACACC GAAACGCGTC GCCATGGCAC TGGGTAAAGA AGATCCCCTC
GCACTCAGAG AGGTCGGTGA ACTGCTGGCA TTCCTGAAGG AGCCTGAGCC ACCACGTGGC
TTTAAAGACG CTATATCCAA GATCCCTATG TTCAAGCAAG CCTTGAATAT GCCGCCGAAA
ACGGTTCGCA ACGCTCCCTG TCAGGAAGTA ATAAAAACCG GCAGTGATGT CGACCTGACT
AAACTCCCTA TCCAGCATTG CTGGCCCGGC GATGTCGCTC CTCTGGTAAC CTGGGGACTG
ACCATCACTA AGGGGCCGCG TCAGAAACGA CAAAACCTCG GGATCTACCG TCAACAGTTG
CTCGATAAAG ATAAACTGAT TATGCGTTGG CTCGATCACC GTGGTGGCGC GCTCGACTTT
AAAGATTTTA AAGAGAAATT CCCCGGTGAA CGTTACCCGG TAGTCGTCGC GCTGGGTGCA
GATCCCGTAA CCATCTTAGG GGCCGTGACT CCGGTACCCG ACTCCATGAG CGAATATGCC
TTCGCGGGCC TGCTGCGTGG TGAGCGCACC GATGTATGCA AGGCCATAAG CTGTGATCTG
GAGGTTCCCG CCACCAGCGA GATCATCTTA GAAGGTTATA TCGATCCCGA GGAGATGGCC
GAAGAGGGTC CCTATGGCGA TCATACCGGT TATTACAACG AGACAGATAA ATTTCCTGTC
TTCACAGTGA CCCATATAAC CCACAGAAAA GACGCTATCT ACCATAGTAC CTACACCGGC
CGTCCACCTG ATGAGCCAGC TATGTTGGGC GTGGCATTGA ATGAAATCTT CGTGCCGATT
CTGCGCAAGC AGTACCCTGA AATTATCGAT TTCTATCTGC CACCAGAAGG CTGCTCTTAC
CGTATGGCGG TGATCTCGAT ACGAAAAGAG TACCCAGGGC ACGCCAAGCG GGTGATGATG
GGAGCCTGGT CATTCCTGCG CCAATTTATG TATACCAAGT TTATTATTAT CGTCGATGAA
GACGTTAATT GTCGTGACTG GAACGATGTT ATCTGGGCCA TCACCACGCG TATGGATCCC
AAGCGCGATA CCGTCATGAT AGAAAACACT CCTATCGATT ATCTCGACTT TGCTTCGCCT
GTTGCGGGTC TGGGCTCGAA GATGGGGATG GATGCCACCA ACAAGTGGGA AGGCGAAACC
GATCGTGAAT GGGGAACCCC AATCGTGATG GATGAGGCCG TGAAACAAAG AATCGATACT
ATCTGGGACG ACTTGGGCAT AGACGATGCC CCTACCCTAT AA
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| Protein sequence | MSFKDLRSFI SHLEANGELK RISHPVDPHL EMTEIADRVL RAKGPALLFE NPVGNEMPVL
ANLFGTPKRV AMALGKEDPL ALREVGELLA FLKEPEPPRG FKDAISKIPM FKQALNMPPK
TVRNAPCQEV IKTGSDVDLT KLPIQHCWPG DVAPLVTWGL TITKGPRQKR QNLGIYRQQL
LDKDKLIMRW LDHRGGALDF KDFKEKFPGE RYPVVVALGA DPVTILGAVT PVPDSMSEYA
FAGLLRGERT DVCKAISCDL EVPATSEIIL EGYIDPEEMA EEGPYGDHTG YYNETDKFPV
FTVTHITHRK DAIYHSTYTG RPPDEPAMLG VALNEIFVPI LRKQYPEIID FYLPPEGCSY
RMAVISIRKE YPGHAKRVMM GAWSFLRQFM YTKFIIIVDE DVNCRDWNDV IWAITTRMDP
KRDTVMIENT PIDYLDFASP VAGLGSKMGM DATNKWEGET DREWGTPIVM DEAVKQRIDT
IWDDLGIDDA PTL
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