| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0496 |
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| Symbol | |
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| ID | 5613315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 611182 |
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| End bp | 611904 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640931341 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001472237 |
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| Protein GI | 157373637 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGTC TTGCTATCGG TATTGGGGTA ACACTTTGTG CTTTTATAGC ACTGATCTGG
CGACATCATC TCCGGTGTCT CAATCAAGGG GTCATTCATA TTGCAAAGCA GTCAAATGCA
TGTGATAGCG AAGTGATAAC ACCATCTTTA GATATAAAGA TACCTGTGCT GCTATCCATA
GTGCTCCTTT TTTCGAGCGT ATCACTTTAC TCGCAACTGG GTCACTTCAG TGACTGGGAT
AAAGGGAGCG TAGATGAACA TATTGATTAC CTGATCACCG CAGATATCAA TAAAAATGCA
AAAACAGTTA ATGAGCAACC AAACAATGAA ATTGCATTAT TAAATTTGGC TCAATCTTAT
GCCGATGGTG GGCTTTATTC AGATTCAGTG AAAACCTTCG ATGAACTACT TCAGTTAACG
GGTGATGATG CCGGTATTTT GGGCATGAAA GCCAATGCCA TGTACTACCG TGATAACCGG
GCGATGAGTC TCGATATCGA TCTCGTTATC GCCAGAGCAC TCGCTATCGA TGAATATGAA
TTTCAGTCCA GATTACTGCT AGCGACTCAC GGATACCTTA ATGGAAATTA TGAAGAAGCC
ATTAAGCAGT GGGAGTTGTT ACTCAAGAGT GATAGCCAAA GTTTTAATAG AGACTCAATT
AATAATGCAA TTTTACGAGC CGAGCAAAAA ATAGCTAATC GTTCAGTGAC TGCATCTGAG
TAG
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| Protein sequence | MNSLAIGIGV TLCAFIALIW RHHLRCLNQG VIHIAKQSNA CDSEVITPSL DIKIPVLLSI
VLLFSSVSLY SQLGHFSDWD KGSVDEHIDY LITADINKNA KTVNEQPNNE IALLNLAQSY
ADGGLYSDSV KTFDELLQLT GDDAGILGMK ANAMYYRDNR AMSLDIDLVI ARALAIDEYE
FQSRLLLATH GYLNGNYEEA IKQWELLLKS DSQSFNRDSI NNAILRAEQK IANRSVTASE
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