Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0476 |
Symbol | |
ID | 5613019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 589131 |
End bp | 591197 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931321 |
Product | peptidase S9 prolyl oligopeptidase |
Protein accession | YP_001472217 |
Protein GI | 157373617 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACAC ATAAGATTTT ACCTAGCGTA CTCTCGACAG CGCTCGCCGC TAGCTTATTT ATAACAGGCT GCTCGCAGAC CCCTTCACCA ACAAACTTGT CAGATCGAGC CACTATCCAA GATCAAAGTC AGCAAGTTCA ACTGCTACCT GTTGAAGCCT TTTTCAACGA GCAAGGGATC AGTGGACTCA AGAGCTCCAG TGACGGAAAG TGGTTAGCCT TTTTCAAAGA GTATCAAGGC GCGAAAAACA TCTATCTGAT GGCCACCGGT ACTGATCTCG ATGAAGCTTT TCCTATTACC ACCTCAAAGG ATCCGATTTA CAGCTTCCGC TGGTCACACC AAGGCAATGA GATCTTCTTC CTTAAAGATA CCGGTGGTAA TGAAAATACC CAGATCTATA AACTCTCTCT GGATACGAGC CAGATTAAAC CTGTCCCGAA CATCACTGCG CTCACCAGTA ATACAGACAT CAGATATGAC CTGCTCAAAC AACCAAAAGA TAAGCCCAAC ACTTTGGTTG TCATGTCGAA TCAAGATAAT CCTCAGCAGA TGGATCTCTT TCGTCTGAAT ATCGATTCCG CAAAAATAAC CAATATTTTT TCTAACACCT ACGGCTTCTC TTCCATAGAG ACAAACCAAC AAGGCGTTCC GGTACTCGGC ACCAGCAGTA ACCCAGACAA TACTTCCGAT CTCTACGCCA AAATTTCTGG GAAATGGACG AGTCTGATCA AGACCCAATT TGGTGAAGAC ATAGATATTC TTAGCTTCGA TGAAGATAAC AACTTGGCCT ATCTTCGTGC CAACATCCAA GGACGAGACA AGCTACAACT GTTACGCCTC AATATGACCA CAGGTAAAAT CGTCACTCTA CATCAAGATC CGCAGGATGA ATCTGATGTT TATGATGTGC TCTTTAACGA TGAAGGTGCA CCACTTGCCG TCTCCTATTA TGGCGGTCGT TTACGCACTT ACCCGCTGGA TGAAACCTTT GCTGACAACT GGCAAAAAAT TAACGACCAC TTCACTCAAG ATGTGGAGAT AACCATCACA GATAGAAACG AGAAAACCGG TCTGTGGCAG CTACATATCG CCAGCGATGT CGATATGGGA AGCGACTATC GCTTTGATGC CAATACTGGA CTCGTGAGCC TTTTGCTTGA GCAAGAAGCA TCGATTAGCC CTGAGCTGCT ATCAAAACGT CAATCCATCA CCTACCAGGC TCGCGATGGC GTGACCATTC AGGCCTATCT GACCCTACCT AAGGGACAAA CACAAAACCT GCCGACAGTC ATTCTTCCCC ATGGTGGCCC CTGGTCCCGA GACTACTGGA CTTTAAGTTC AGGCTATTTC AACCCGATTG CTCAGCTATT GGCAAACCGC GGCTATGCGG TATTACAGCC CAACTTTCGT GCCTCTACAG GCTTTGGTAA ACGCTTCCTC AATGCAGGCA ATAAAAACTG GGGCACCGGC AGCATGCAGG ACGATCTGAC CGACGGGGCG CATTACCTCA TCAAAGAGGG GATAGCCGAT AAACAGCGCT TAGGGATCAT GGGCGCATCT TATGGTGGCT ATGCAGCGCT TGCCGGCGCG ACCTTCACCC CGGATCTGTA TCAGGCGGTG ATCTCCTATG TCGGTCCCTC TAGCCTTATT ACACTACTGG AATCATTCCC TCCTCACTTC CGTCCCTATC TGGGTCAGTT TTACAGTGCG GTAGGCGATC CTGAGATCGA TACAGACAGA GTAGATATGA AGGCTCGTTC TCCCATTAAT TTCGTCGATA ACATTAGGGC GCCGCTGATG TTAGTCCAAG GGGCGAATGA TCCCAGAGTG ACCCAAATTG AATCCGATAA TATCGCGCGG GTGATGTATA ACCGCAAACT ACCGGTTGAA TACATTCTGG CAAAAGATGA AGGTCATGGC TTCCGTAAAC GGGATAATAA GTTAGCCTAT ATTGTGGCTA TGGAGCAGTT TTTCGGTAAA CACCTGGGCG GCCGAGTAGA TAATGCGGTG ACTCCCGCTC TCACCGCACA CCTCGATACG CTAAAGGTTG ATGTGAGCCG ATTATAA
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Protein sequence | MKTHKILPSV LSTALAASLF ITGCSQTPSP TNLSDRATIQ DQSQQVQLLP VEAFFNEQGI SGLKSSSDGK WLAFFKEYQG AKNIYLMATG TDLDEAFPIT TSKDPIYSFR WSHQGNEIFF LKDTGGNENT QIYKLSLDTS QIKPVPNITA LTSNTDIRYD LLKQPKDKPN TLVVMSNQDN PQQMDLFRLN IDSAKITNIF SNTYGFSSIE TNQQGVPVLG TSSNPDNTSD LYAKISGKWT SLIKTQFGED IDILSFDEDN NLAYLRANIQ GRDKLQLLRL NMTTGKIVTL HQDPQDESDV YDVLFNDEGA PLAVSYYGGR LRTYPLDETF ADNWQKINDH FTQDVEITIT DRNEKTGLWQ LHIASDVDMG SDYRFDANTG LVSLLLEQEA SISPELLSKR QSITYQARDG VTIQAYLTLP KGQTQNLPTV ILPHGGPWSR DYWTLSSGYF NPIAQLLANR GYAVLQPNFR ASTGFGKRFL NAGNKNWGTG SMQDDLTDGA HYLIKEGIAD KQRLGIMGAS YGGYAALAGA TFTPDLYQAV ISYVGPSSLI TLLESFPPHF RPYLGQFYSA VGDPEIDTDR VDMKARSPIN FVDNIRAPLM LVQGANDPRV TQIESDNIAR VMYNRKLPVE YILAKDEGHG FRKRDNKLAY IVAMEQFFGK HLGGRVDNAV TPALTAHLDT LKVDVSRL
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