| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0475 |
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| Symbol | |
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| ID | 5613018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 587565 |
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| End bp | 589082 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931320 |
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| Product | Na+/H+ antiporter NhaC |
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| Protein accession | YP_001472216 |
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| Protein GI | 157373616 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1757] Na+/H+ antiporter |
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| TIGRFAM ID | [TIGR00931] Na+/H+ antiporter NhaC |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTCAA AGAATGAGCT TCAGCAATCG CCGCCTGATG AGCCAGAAAA AGTATCTCAA
CATAAGCCCG CGAGTCTGCT CGATGCGTTA ACTCCCATTA TCGCCTTGGT TGCCATGTTG
ACGACGGCCG TGTATCTGTT TTCATCGGAT AGCTCTTCGG GGGCTAACCA GATAGCTCTT
ATCATGGCGG CCTGTATCGC CTTGGTGATT GGCGCCAAAA ATGGCTATAG CTGGAAGGAG
ATGGAGGCGG GGATAGTACA CAGTGTCTCT ATGGCGACGG GTGCACTGCT GATTCTATTC
TCGGTGGGCT CCCTAATCGG TACCTGGATC TTAGCCGGTA CGGTACCGAC GATGATCTTC
TATGGCATGA AGGTGCTTAA CCCCGAATAC TTCTATGCTG CATCGTGTTT ACTTTGCGCC
GTAGTGGCGA TCAGTATCGG TAGTTCATGG ACCGTGGCGG GCACCTTAGG TATCGCCTTG
ATTGGTATTG CCGGAGCGAT GGGGCTGAGT GTCGAAATTA CCGCAGGCGC CATCATCAGT
GGCGCCTATT TTGGCGATAA GATGTCGCCT ATGTCAGACA CGACTAACCT GGCACCTGCT
GTGGCGGGTA CGGATCTCTT TAGCCATATC AGGCATATGG TGTGGACGAC GACGCCGAGT
ATTATTATCG CCTTGATAGG CTTCGTTATC TTAGGCTTTA GCACTCAGAG TTCAGGAGGT
AGCAGCGATC TCGAATCGAC CCTGAATATC TTACAATCTC AATATGCTCC GGGCGTACAT
CTGCTCTTGC CTCTGCTGGT GGTATTATTG CTGGCTTATA AGAAGGTGCC CGCATTTCCC
ACAGTGATTT TAGGAACCTT TGCCGGCGCT ATCTGTGCAG CGATTTTTCA GTTTGACAAT
ATTATTGAAT TTGTCGGCGA CGACAATTTA CTGCCAGCAG TTGCGTTACT GAAGGGGATC
TGGATTGCCA TGTTCGACGG TTATACGGCG AATACCGGCG ATACCGTGCT CGATAGCCTA
CTCAGCCGTG GTGGCATGAG CAGCATGGTC AATACCGTTT GGTTAATCCT CTGTGCCATG
GCTTTTGGCG GAGTCATGGA GCGCACCGGA TTATTGAAGC GCATTTTACA GAGTATCTTG
GGTGTGGTGA CATCGAGCAG TAGCTTAATT ATCACGACTC TGGCCAGTTG TATCGGGGCT
AACTTGATCA CCGGTGATCA GTTTATTGCC ATCTTACTGC CGGGTCGCAT GCTCAAGGTG
GAGTACACCA AGCGAGGATT AGCGCCTGTT AATTTGAGCC GTGCCTTAGA AGACTCGGCG
ACGATCACCA GTCCTCTGGT TCCCTGGAAT ACCTGTGGTG CCTATATGGC CAGTACCTTA
GGGGTCGCGA CAATTGCTTA CCTGCCGTAC GCCTTCTTTA ACCTGGTCTG CCCGTTAATC
AGTGCAAGTT ATGCTTATTT TAACTTCAAG ATAGAGAAGC TAGAAGAGGT ATCAGAGGCG
GAAGAGGTGA TTGCGTAA
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| Protein sequence | MPSKNELQQS PPDEPEKVSQ HKPASLLDAL TPIIALVAML TTAVYLFSSD SSSGANQIAL
IMAACIALVI GAKNGYSWKE MEAGIVHSVS MATGALLILF SVGSLIGTWI LAGTVPTMIF
YGMKVLNPEY FYAASCLLCA VVAISIGSSW TVAGTLGIAL IGIAGAMGLS VEITAGAIIS
GAYFGDKMSP MSDTTNLAPA VAGTDLFSHI RHMVWTTTPS IIIALIGFVI LGFSTQSSGG
SSDLESTLNI LQSQYAPGVH LLLPLLVVLL LAYKKVPAFP TVILGTFAGA ICAAIFQFDN
IIEFVGDDNL LPAVALLKGI WIAMFDGYTA NTGDTVLDSL LSRGGMSSMV NTVWLILCAM
AFGGVMERTG LLKRILQSIL GVVTSSSSLI ITTLASCIGA NLITGDQFIA ILLPGRMLKV
EYTKRGLAPV NLSRALEDSA TITSPLVPWN TCGAYMASTL GVATIAYLPY AFFNLVCPLI
SASYAYFNFK IEKLEEVSEA EEVIA
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