| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0465 |
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| Symbol | |
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| ID | 5612176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 575858 |
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| End bp | 576793 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931310 |
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| Product | band 7 protein |
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| Protein accession | YP_001472206 |
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| Protein GI | 157373606 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.163647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCAG GCATAAATAC AGATCTAATA GTGTTAGGTA TCTGGGGGCT TATCTTTGCC
TTATTTATTA TTAAGTTGTT TCAATCGATT CGTTTAGTGC CGACTAAATC GGCTTATATC
GTAGAGCGTC TTGGTAAATA TCATTCGACT CTGGATGCAG GTTTTCATGC CCTGGTCCCT
TTTGTAGACA AGGTATCCTA TATTCACGAT CTTAAAGAGG AGACTATCGA TGTCCCCCCT
CAGGAGTGTT TCTCCAGCGA TGAAGTGAAT GTTGAGGTCG ATGGCGTTAT CTATATCTCG
GTCGTGGATC CGGTTAAGGC CAGCTACGGT GTGACAGATT ACCGTTATGC AGCGATACAA
CTGGCTCAAA CCACCACTCG TTCAGTGATA GGAACTCTGG ATCTTGACCG CACCTTCGAA
GAGCGTGACG TGATCAGTGC CAAAGTGGTT GAAGTACTCG ATCAGGCTGG CGCCATGTGG
GGCATCCGTG TACATCGCTA CGAGATAAAG AATATTACCC CACCGGAAAC GGTGAAAAAT
GCCATGGAGA TGCAGGTGAA TGCAGAACGT GAGCGCCGTG CACTGTTGGC GAAGAGTGAG
GGGGATAAGC AGAGTAAGAT CAACCGCTCC GAAGGTATCA AAGCCGAGAT GATTAACCTC
TCGGAGGGTG AGATGCAAAA GCGTATCAAC GAAGCGGAAG GTAAGGGGGA GGAGATCTTA
ACCATCGCCA AGGCCACCGC CGAGTCTATC GAACTCATGG CTACCGTTAT CGCCGCCCCC
GGTGGTAAGA ATGTGGTTCG CATGCAGCTC GGCGCTCAGT ATCTTAAGCA ACTGGACGGT
TTGAGCAATG GTGCCAGTAG GGTGGTACTG CCAGGGAACA TGATGGACTT CGATCACTGG
ATGGACAGCA TCGGTCTGGA AGAGAGTAAG TCCTGA
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| Protein sequence | MIAGINTDLI VLGIWGLIFA LFIIKLFQSI RLVPTKSAYI VERLGKYHST LDAGFHALVP
FVDKVSYIHD LKEETIDVPP QECFSSDEVN VEVDGVIYIS VVDPVKASYG VTDYRYAAIQ
LAQTTTRSVI GTLDLDRTFE ERDVISAKVV EVLDQAGAMW GIRVHRYEIK NITPPETVKN
AMEMQVNAER ERRALLAKSE GDKQSKINRS EGIKAEMINL SEGEMQKRIN EAEGKGEEIL
TIAKATAESI ELMATVIAAP GGKNVVRMQL GAQYLKQLDG LSNGASRVVL PGNMMDFDHW
MDSIGLEESK S
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