| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0462 |
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| Symbol | |
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| ID | 5612173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 573219 |
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| End bp | 573971 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931307 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472203 |
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| Protein GI | 157373603 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3248] Nucleoside-binding outer membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00130481 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACAAAA AATGGCTTTT ACTCGCGCTT TTCGCCGCAC CACAGGCGAT GGCCGATGAT
ATGATCCACT GGTGGGATGC CAGCGTGACC GCGTTATACG GCGATAATTA CGATCTAGCG
CCTTCCGATA AGCAAACCAC TTTCACCTTC GAAACTGCCG GCGCATGGCA ATATGGTGAC
TGGTTTGCGT TTCAGGATCT GATCTATTTC AACGGTTCGA ACGTCAGTAG TGACAGCACG
ACCTACGGCG AAATCTCGAC TCGATTGAGT GCCGGTAAAA TTTCCGGTAA AGAGATCGGC
TTTGGCCCGG TCACCGACCT GTCTCTGGCC ATGACCTTCG AAGAGGGTGA AGGACCGGTT
AAGAGCTTCC TATATGGTCT TGGCATGGAC ATAGCTATCC CTTACTTTAG CTATTTTCAA
CTCAATACCT ATCGACGTGA AGCCATCAGC AGTGGCAATA TCAGCGACGG TTGGCAGATA
ACTCCCGCCT TTAGAATGGA CTTTCCCGTT GGCAACTCGA ACATAGTATT CGATGGTTTC
TTTGACTGGG TATTCTCTGC CGATAACCAA GGCTATGAAG AGAACTTTCA CTTCAATCCT
CAGCTGAAAT ATGACCTGGG CGCGGTCATC TTCGGAAGCC ACGAGAAAAA CAAATTCCTT
GTCGGTGTCG AGTATGATTA CTGGAAGAAC AAGTACGGTG TCAAAGGTGT CGATCAAAAC
ACCTACTCGG TTATAGCTAA ATATCACTTC TAA
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| Protein sequence | MNKKWLLLAL FAAPQAMADD MIHWWDASVT ALYGDNYDLA PSDKQTTFTF ETAGAWQYGD
WFAFQDLIYF NGSNVSSDST TYGEISTRLS AGKISGKEIG FGPVTDLSLA MTFEEGEGPV
KSFLYGLGMD IAIPYFSYFQ LNTYRREAIS SGNISDGWQI TPAFRMDFPV GNSNIVFDGF
FDWVFSADNQ GYEENFHFNP QLKYDLGAVI FGSHEKNKFL VGVEYDYWKN KYGVKGVDQN
TYSVIAKYHF
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