| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0461 |
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| Symbol | |
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| ID | 5612286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 572328 |
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| End bp | 573086 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931306 |
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| Product | uridine phosphorylase |
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| Protein accession | YP_001472202 |
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| Protein GI | 157373602 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG2820] Uridine phosphorylase |
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| TIGRFAM ID | [TIGR01718] uridine phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.137715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAGATG TATTTCACTT GGGATTGACC AAAAAAATGT TGGATGGGGC TAACTTGGCG
ATTGTGCCTG GTGATCCAGA GCGTGTTAAG AGAATTGCCG AGTTGATGGA AGGCGCTACA
TTCCTGGCCA GTCATCGTGA ATATACTAGC TACCTTGCCT ATATCGACGG CAAAGCTGTA
GTGGTATGTT CTACCGGTAT TGGTGGACCA TCGACCTCTA TCGCAGTTGA AGAGTTAGCT
CAGCTAGGTG TGACAACCTT CCTGCGTGTG GGTACGACCG GCGCTATCCA GCCTCAAGTG
AATGTTGGTG ATGTTATCGT AACTCAAGCA TCGGTTCGTC TCGATGGCGC GAGTCTGCAC
TTTGCTCCTA TGGAGTATCC AGCCGTTGCT AACTTCGAAT GTACTACAGC TATGGTCGAA
GCAACCCGTG ATGCAGGCCT GGAGCCGCAC ATCGGTATTA CAGCCTCTTC AGATACCTTC
TATCCTGGTC AAGATCGTTA CGATACCGTC TCTGGTCGAG TAACGCGTCA GTATAGAGGA
ATGATGCAAG AGTGGCAGGA CCTTGGCGTG CTTAACTATG AGATGGAATC TTCGACGCTA
TTTACCATGT GTGCTTCGCA AGGTTGGCGT GCGGCATGTG TTGCGGGTGT GATTGTAAAC
CGTACACAGC AAGAGATCCC TGATGAAGCT ACGATGAAGA AAACTGAAGT GAGTGCAGTT
TCTATCGTCG TTGCAGCAGC GAAGAAGTTA CTGGCTTAA
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| Protein sequence | MSDVFHLGLT KKMLDGANLA IVPGDPERVK RIAELMEGAT FLASHREYTS YLAYIDGKAV
VVCSTGIGGP STSIAVEELA QLGVTTFLRV GTTGAIQPQV NVGDVIVTQA SVRLDGASLH
FAPMEYPAVA NFECTTAMVE ATRDAGLEPH IGITASSDTF YPGQDRYDTV SGRVTRQYRG
MMQEWQDLGV LNYEMESSTL FTMCASQGWR AACVAGVIVN RTQQEIPDEA TMKKTEVSAV
SIVVAAAKKL LA
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