| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0450 |
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| Symbol | |
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| ID | 5610381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 563331 |
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| End bp | 564059 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931295 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472191 |
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| Protein GI | 157373591 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0217] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.777332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAGAG CATACCAGAA CAAGAAAGAA TCCATGGCAA AAACGGCTGG GCAGAAAACC
AGAATATATT CTCGCTATGG TAAAGAGCTC TACGTTTGCG CAAAAAATGG TGGTTTCGAT
CCTGATGGTA ACCTTCCACT ACGCCAGTTG ATCGCCAAGG CCAAGAAAGA CCAGGTACCG
GCTCATGTTA TCGAACGTGC GATCGAAAAG GCCAAGGGGG GCGGCGGTGA AGATTATGAA
ACTGCACGTT ACGAAGGCTT TGGTCCTGGT GGCTGCATGG TCATCGTCGA TTGCTTAACC
GACAACGGCA AGCGCACCTT CACCGAAGTT CGTCAGGCAT TCGTTAAAAA TGACGCCAAA
CTGGGTGGCC CGGGTACCGT CGGTCACATG TTCGAACACC AAGCCATTTT TGTTTTCGCC
GGAGAAGATG AAGAGGAAGT ACTTGAGATG TTGATGATGG CCGATGTCGA CGTCACAGAT
GTTGAAGTCG AAGATGGCAT GATCAGTGTC TATGCACCGA ATACCGAGTT TTACAAGACT
AAGACTGCAT TGAACGAAGC CATGCCTGAA GTCGAATTTG TGGTTGAAGA GATCACCTTC
GTGCCACAAA CCATGACAGA TATCAGCGAT CCTGAAGTGA TCGAGCAGTT AGAGAAATTC
CTCGCTGCCC TCGAAGATTG TGATGACGTG CAAAATGTCT ACCACAACGC TGAGTTTGCT
GAAAACTAA
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| Protein sequence | MGRAYQNKKE SMAKTAGQKT RIYSRYGKEL YVCAKNGGFD PDGNLPLRQL IAKAKKDQVP
AHVIERAIEK AKGGGGEDYE TARYEGFGPG GCMVIVDCLT DNGKRTFTEV RQAFVKNDAK
LGGPGTVGHM FEHQAIFVFA GEDEEEVLEM LMMADVDVTD VEVEDGMISV YAPNTEFYKT
KTALNEAMPE VEFVVEEITF VPQTMTDISD PEVIEQLEKF LAALEDCDDV QNVYHNAEFA
EN
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