| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0442 |
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| Symbol | |
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| ID | 5613911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 548378 |
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| End bp | 551380 |
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| Gene Length | 3003 bp |
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| Protein Length | 1000 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931287 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472183 |
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| Protein GI | 157373583 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.129747 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATACC TGTTATTAAT GATCACCTTC CTGATCACCG CATGCGGTGG CGGCGGTGAT
GATGACACCA CGACACCGAC ACAAGAGAAA CTAACTCATC CGGGGCTTTC AGCACTTGAT
ATCCGGGTCG ACTATTCACC CGATGGTAGC CTGACACCAG TACTCAGTGG TTCTCAGGGC
AATATAAGTT TCAGCCTGGC CGACGGCGCT GCGAATGACG TAGTGCGAGT CAATCAAAAC
AGCCTAACTA TATTAAATGT CGGTCAAACC AAGTTAATCG TTACCGATAG TGGTAATAGC
CAGTATAAAG CCACAAGCAG ATCACTAAAT GTTTCTGTCG ACAGAGCGAG TCGTGATCCT
CTGCTGACTA ATAACTACTC CTACCCTTAT GCTGCCGGTG CGATTCACCA GGTCGGCGTT
AGTGGTGCAA AAGGTCAATT GCTTTACGAG CTCAGCACTG GTTATCCCGA TGATGTTGTC
AAAATCGACA TCGCAGGTTC GCTAATTGTT TGGGGCGAGG GGCAGACTCA AGTTACCGTC
AAAGATGACG GGGGGCGAAA CTACCAGGCC AGCGAGAGTC AATTCTCCAT TACCGTCGAA
GCCGCAAACT CGCAGTTTGC TTCCTATCGA GACATCACCA ATAAACCACT GGTTTTTGGT
GGCACCTTGC TTCCGGTTTA TTCAGGATCA CCGACAAGTG AGATAAGCTA CGCTATCGCA
GAGAATGCCA GTCAAGATGT AGTTCAGATC CACCCAATAA CGGGTGTGAT GAATATCAAA
GGAGCCGGAG AGACAGAAAT CGTCGTCAGT CAGACAGCTG AAGATAATCA TCAAGATATT
GCCAAGCAAA CTTTTAAAGT CAGAATTAAC AAAGCCGATA ACACAGATTT TATCGCCAAT
GATCTAACGC TCCCCTATGG ATTCGATGAT GAGCCAAGAC TGCAAACAAT CGGCGCTCAG
GGAACCCTCA CTTTCGAGAT TGTCGATGGC GAGTCAACCG ATGTGATCAA CTTTATCAAC
AGCGAAACCG GACAATACCG CTTCAGCGGT ATCGGTGAGA CGAAGGTGAA GATAACAGAC
TCAGGAAACA GAAACTATCT GAGTAAAACG GTTATTACCA CAGTGAATGT CGAACGTGTT
CAATCGGTAC CGCTCTCCTC TGTCAATCTT GAGAGTGCAT ACCAGCAAAA CAAGGTGATA
TCGGCTCAAG TCGCAAGCAG GCAGGGCAAG CTAAGCTTCT CTCTTGCAAA AGATAGCGCG
ACGGATGTGG TAAGCATTGA TGCACTATCG GGTGAGATGA CGGTACTGAA ACCCGGTAAG
GCAGAGATCA CAGTCACCGA TGACGGTGAT CTGTTCTACA TACCGCAAAC TACCAGCTTC
TTCGTGACCA TCAATAAACT CGTTAACGAT CAATTCAGTG TCGACGATGA TCTGTACGAT
AATGTGGCCA ATACCGTTTA TACACCGGTA GCGAAAGGAA GTCAGGGGCC TGTCACCTAC
GCGATTTCTG CCAACTCAAC GGCTAACGTG TTAAGCCAAG ATCCGACGAC CAAGGTCATC
ACATTAACCG GTGCCGGTCG GGGTTGGATA ACCGCAACCG ATCATGGCAA CGACTACTAC
CAGAGCCAAA CAACTGACTT CATTGTCGAT GTAGGCTATG CCGATGGTAC CTTGAAACCC
TTAGCCATTT CGGCAGGCTA TGCCCCAAAC AAGGTCGTCA CTATTCCGGT ATCGGGTGTC
GTTGGACAAC TAAGCTCTCA GCTCGAGAGA GGCCAACCTG ACGATGTCGT CAATATCGAT
ATTGTTAACC GCACCGTCAC TATTAAAAAT GCTGGCACCA CTTACTACAC GCTTACTGAT
TCAGGAAGTG CGGCAATCGC CCCTCGTAGA GTGCAATTAC GGGTAACGAT AGCCAAGGCC
GCAGCGAATG TTGATTTGAG CCTGACTTCA ACACTCATAG ATACGATATA TGAAGAGGGT
AAGCAGCTTA GTTCACCCGC TGTATCGGGT AGCGCGACAG AGAGTACGAT TAAATACTAT
GTCGATTATA GCGATCGACA GGTAGTGACT GCAGACTCAA GTAGCGGTGC GCTAACAATT
AAAGGAGCCG GTTCGGCTCA GGTACAGGTA ACTGAGGTGA GCCGCAACTT TGAGGACACG
ACACGCAGCT TCACGGTTAA CGTCGGTAAG GCTAAGCATC CTGGATTGAC CGTTGCTAAA
CAGGTTCCCG GCGCGAGTTA TTACCCGGGG CTTGAGATGG CGCCCGCAGA GCTTGGCAAT
CAATTCGGAG AGCTTAGCTT CAAATTCACA CACACAGAAA AGCCTGAGAC TTATGAATTA
ACCCGAAACG GCACCTTGAG GGTACTCAAG TACGCAGCCT CGCGTACTAA CACTTCTGTC
CGTATAACCG TCACCGATGA CGGCGGCGAT GATTACCTGC CAAGCTCTGT CGATTATGAT
GTTTATGTCA ATCCTATCGA AGAGGGAACT GGTGAAAAGT CTGTATTTAC GTTCGACGGC
ACCGAGCTAT CGATAACTTC GCCCATCGAT GTGGCTGCCG GAGATGTTAC ATACTTCTCG
GCCTCCGATA CCCGTTCAGA AGCAGAAACC ATGGGTGATA ATCTTCAAAA ATCCGGCGGT
TATGCCACAC AGAGGGTTAC CGTTTGTCAT GACCCATCAG TCTTAACCAC TTGCACCTTA
GTAACCGTCA GACTGCAAAA CACCAGCCAC TGTCCCGATG GCAGTAAAAT AGCCTATCCT
GTAGGCGCTA AAATTCGTTA TGAGTGCCCG GGCCTAAAAC AACCGATAAA CTCTGAGGTG
ATGGTAAGCT TCGATAAAAC GGATCTCTTT AATCCATCGC TGGCAGTTGG CACCTATCAG
GCTCTAGAAC CGATAACCTT AGTACACTTT GCCAAACCCT ATCGCGCGGG TGGTGTCATC
GAGATGGGTG ATATTCAAGC CAGAGCCTGG TGGCTGATCA AGGTAAATCT GACCGTAAAC
TAA
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| Protein sequence | MRYLLLMITF LITACGGGGD DDTTTPTQEK LTHPGLSALD IRVDYSPDGS LTPVLSGSQG
NISFSLADGA ANDVVRVNQN SLTILNVGQT KLIVTDSGNS QYKATSRSLN VSVDRASRDP
LLTNNYSYPY AAGAIHQVGV SGAKGQLLYE LSTGYPDDVV KIDIAGSLIV WGEGQTQVTV
KDDGGRNYQA SESQFSITVE AANSQFASYR DITNKPLVFG GTLLPVYSGS PTSEISYAIA
ENASQDVVQI HPITGVMNIK GAGETEIVVS QTAEDNHQDI AKQTFKVRIN KADNTDFIAN
DLTLPYGFDD EPRLQTIGAQ GTLTFEIVDG ESTDVINFIN SETGQYRFSG IGETKVKITD
SGNRNYLSKT VITTVNVERV QSVPLSSVNL ESAYQQNKVI SAQVASRQGK LSFSLAKDSA
TDVVSIDALS GEMTVLKPGK AEITVTDDGD LFYIPQTTSF FVTINKLVND QFSVDDDLYD
NVANTVYTPV AKGSQGPVTY AISANSTANV LSQDPTTKVI TLTGAGRGWI TATDHGNDYY
QSQTTDFIVD VGYADGTLKP LAISAGYAPN KVVTIPVSGV VGQLSSQLER GQPDDVVNID
IVNRTVTIKN AGTTYYTLTD SGSAAIAPRR VQLRVTIAKA AANVDLSLTS TLIDTIYEEG
KQLSSPAVSG SATESTIKYY VDYSDRQVVT ADSSSGALTI KGAGSAQVQV TEVSRNFEDT
TRSFTVNVGK AKHPGLTVAK QVPGASYYPG LEMAPAELGN QFGELSFKFT HTEKPETYEL
TRNGTLRVLK YAASRTNTSV RITVTDDGGD DYLPSSVDYD VYVNPIEEGT GEKSVFTFDG
TELSITSPID VAAGDVTYFS ASDTRSEAET MGDNLQKSGG YATQRVTVCH DPSVLTTCTL
VTVRLQNTSH CPDGSKIAYP VGAKIRYECP GLKQPINSEV MVSFDKTDLF NPSLAVGTYQ
ALEPITLVHF AKPYRAGGVI EMGDIQARAW WLIKVNLTVN
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