| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0441 |
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| Symbol | |
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| ID | 5613910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 545598 |
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| End bp | 548210 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931286 |
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| Product | sensory box protein |
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| Protein accession | YP_001472182 |
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| Protein GI | 157373582 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00529365 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTATAG GGAAAAAGTT AATCGTCTTT ATTGTAGGTT TCTGCCTTCC CGCGGTGATT
TCTGTCTCTT ATTGTTTAAG CATGTGGTTC GATCATAGAG TTGATACATT CAAAAACAGT
GCGGTCAACA TTGAACTCAG CACCATTAAG ACCCAGATAG AAAAAGATAT AAATCAGCTG
CAGCTATTAG CTAATGTCTA CGCCTTACCC CTTTCAAAAC TTGCCATCGA AGAGAGAAAA
TTATTAGATG AAGCTTGGCG TGACAGTCAG CTTGCCGAGC ATTTGAGTCT GTTTTATCTG
AATAATGGTG AACTGCAGCC ATTCTCCCCC ATATACGATG ACATCATGTC ATTTGAGTTC
GATACGGTGC CTGTCCAGCT CAAACATGCC ACTCAACCCC TGTCCGGTAT CTATATGCTG
CAGGATAAGA GTTTCATCGT CAGCTTAGTG CCAGTTTCGC AGAGTCGTTC GATTATATTG
GCCAGACAGC TTACACCCGA ATATCTCTCT AGTTATGGCC TCAAAGGGTT AGTCAGTCAT
ATCAATTTGG TGCCAGGTGA ATCAAGTCTG GTCTATGACG TAAATAGTGA TAAACCAATA
TCGAGTATCA AGGTACCAAG TTTAGTCTTT GAAAGTCCTG TTCATCTGGA AATTCAGTTC
GCCGAAAATG CGTTCAATCA GGTGAAGTTA AAGTATGACC TGGTGACCTT CTCTATCGTG
GGGGTGGGAT TACTGATACT TATCATCGGA TATATCTGGC TCAAGCTGGG GCTTATTCGT
CCCTTCCGTC GACTGATGAC TCAGGTTGCC GATATCGATC CCATTGCCAA AACCTACACG
CCGCTTGTCG GAAGTGGTTG CTCAGAACTT GTTATCATGG CCGAGAGAGT GAATACCTTG
CTTGCACGAA TATTTCAGCA GAAGGAGCGC TTTAAAACGA CATTAGAATC GATTGCCGAG
GCGGTGATTC TGACCGATAT CGGAGCTAAG GTGGTGTATT TAAATCCCCA GGCCGAGCGG
TTACTCGGCG TTAAAGGGGA AAGTGCCATA GGCGTTTCAG TAGACTCCTT GGTAAAAACA
GACAAGAGTA TCAAAGATGA CCTGTTTGAA TTCATGTTTA GTCAGGCTCA ACAACCCGTA
TTAAGTAAAC TAAAGCTGAA AACCGATAAG ACTCGAATTC TGGAGCGTAG TATCAGTAAT
TTACTTAATC AGCAGCGGAT CGTGATAGGT ACTGTGATTG TGCTTCGCGA TATTACCCGA
GAGGAGCTAC TTAAAAGGCA GTTAAGGCAA AAGGCTAACT TCGACTCCAT CACTTCACTA
TTAAATCGTC GCGCCTTTGA AGAGAGGTTG GAGAAATTTA GCCATGATGC TCAATCGATA
GCGATCTGCT ATTTCGACCT GGAGCAGTTC AAGTTAATCA ATGACTCCTG CGGGCACAGC
GCCGGAGATA CCATGCTGGC CATGGTAGCA AAAGCGATGC AATCCTGTTT GAGTAAAGAT
GAGATGTTAG CTCGGTTAGG TGGAGACGAG TTCGGTTTAG CTATCCGGGA TCATAATGCA
TCAGAGGTGG CTCAGCTGGT GAAACGGATC GTTTCCAGTG TTTCGATGCA GGTGCTACGT
GATAATGGGT GCCACTATAA GGTCGGGGTC AGTGCCGGTG TGGCTATCGC TCGGGCACCC
TATATCAGCC CGAAAGAGCT GATCAAAGAT GCCGATGTGG CGTGTATTGC CGCTAAGCGA
AAAGGCAGTA ATCAAGTTCA TTTTTACGAT GATAACGATA AAGAATCCAT CTATCAGCGT
AACGCACCTA TGTGGGCGGT AAGAATTGGT CAGGCGATAG AGCATAATGA ACTACTACTC
TATTACCAGC CAATCAAAGG TATGGGCCCG GGCGAACATA AACAACGCAT GGAGATCTTA
CTTCGCATTC AGGAACCATG CGGGCGCATC TTATCTCCGG CCCAGTTTAT TGAAGCCGCT
GAGCGGTTTA AGCTAATGAA TGATGTCGAT AAAGAGGTCA TTCGAAAGGC ATTTCTGTGG
TTGTCGCTGC ATGAAGAAAT TTGGGATGAT CACTGCATCT CGATTAACCT TTCCGGCAAT
AGCTTAGGTG CCGAAGGCAT GGTGGAGTAC ATTGCCGAGC AGTTTAAGCG CTTCGAGATC
CCGAGCAAAT GTATCTGTTT TGAGATCACA GAGACCAGCG CGATTCAAAA CAGAAATCGA
GCCATGGATA TGCTCAATTA CCTGCGTAAA CTAGGTTTTT CATTTGCCTT AGATGATTTC
GGTACCGGTT TCGCATCGTA TGGCTACCTG AAAGAGCTTC CTGTCGACTA CGTAAAAATT
GATGGCTGTT TTGTCAAAAG TTTAGCGACC AATGCGAAAG ACTTTGCCAT CGTTAAGTCC
ATTCACGATG TCTGTGATGT GATGGGAATT GAGACTGTGG CAGAGTTTGT TGAAAATCAG
GATATTATCG ACAGGCTTGA AGATATCGGC ATTAACTATG CCCAAGGCTA TGCAATAGGC
CGCCCTAAGC CTTTAGAGAC ATATATTGAG CTTAGACGTT CCAGAGGGCA GCCGTTGCAA
GCTAAGCCCG CACTGGAGCT TATCAGTGCC TGA
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| Protein sequence | MRIGKKLIVF IVGFCLPAVI SVSYCLSMWF DHRVDTFKNS AVNIELSTIK TQIEKDINQL
QLLANVYALP LSKLAIEERK LLDEAWRDSQ LAEHLSLFYL NNGELQPFSP IYDDIMSFEF
DTVPVQLKHA TQPLSGIYML QDKSFIVSLV PVSQSRSIIL ARQLTPEYLS SYGLKGLVSH
INLVPGESSL VYDVNSDKPI SSIKVPSLVF ESPVHLEIQF AENAFNQVKL KYDLVTFSIV
GVGLLILIIG YIWLKLGLIR PFRRLMTQVA DIDPIAKTYT PLVGSGCSEL VIMAERVNTL
LARIFQQKER FKTTLESIAE AVILTDIGAK VVYLNPQAER LLGVKGESAI GVSVDSLVKT
DKSIKDDLFE FMFSQAQQPV LSKLKLKTDK TRILERSISN LLNQQRIVIG TVIVLRDITR
EELLKRQLRQ KANFDSITSL LNRRAFEERL EKFSHDAQSI AICYFDLEQF KLINDSCGHS
AGDTMLAMVA KAMQSCLSKD EMLARLGGDE FGLAIRDHNA SEVAQLVKRI VSSVSMQVLR
DNGCHYKVGV SAGVAIARAP YISPKELIKD ADVACIAAKR KGSNQVHFYD DNDKESIYQR
NAPMWAVRIG QAIEHNELLL YYQPIKGMGP GEHKQRMEIL LRIQEPCGRI LSPAQFIEAA
ERFKLMNDVD KEVIRKAFLW LSLHEEIWDD HCISINLSGN SLGAEGMVEY IAEQFKRFEI
PSKCICFEIT ETSAIQNRNR AMDMLNYLRK LGFSFALDDF GTGFASYGYL KELPVDYVKI
DGCFVKSLAT NAKDFAIVKS IHDVCDVMGI ETVAEFVENQ DIIDRLEDIG INYAQGYAIG
RPKPLETYIE LRRSRGQPLQ AKPALELISA
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