| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0440 |
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| Symbol | hemE |
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| ID | 5611369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 543991 |
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| End bp | 545055 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931285 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_001472181 |
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| Protein GI | 157373581 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00115919 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGAAT TAAAAAATGA TCGTTATTTA CGCGCCTTAC TAAAACAGCC TGTCGACAGA
ACACCTGTCT GGATGATGCG TCAAGCTGGC CGTTACCTTC CAGAATATAA AGCCACACGT
GCAGAAGCCG GTGACTTTAT GTCTCTGTGT AAGAATCAGG ATTTGGCTTG TGAAGTGACA
CTTCAGCCAC TTCGACGTTA TGATCTCGAT GCAGCAATCC TATTCTCGGA TATTTTGACC
GTACCAGATG CCATGGGCTT AGGTCTGTAC TTCGAAACAG GTGAAGGGCC ACGCTTCCAG
CGTCCTACCG ATACTATCGA CTCAATCAAG AAGCTATGTA TTCCAGATCC AGAAGATGAG
CTGGGTTATG TCATGCGTGC CGTGAGCACT ATTCGTCGTG AGCTTAAAGG CGAAGTACCG
TTAATCGGTT TCTCTGGCTC TCCATGGACA CTGGCGACTT ATATGGTTGA AGGTGGTTCA
AGCAAGACAT TCGAGAAGAT CAAGAAGATG GCCTATGAAG AGCCAGCTAC ATTGCACTTG
CTACTCGATA AACTTGCTGA CTCAGTAATT TTATACCTAA ACGCTCAAGT GGCTAACGGT
GCTCAATCAC TGATGATTTT CGATTCATGG GGTGGTGCAC TTTCACATCA CGCTTACCGT
GAATTCTCAC TGCGTTATAT GCAAAAAATT GTCGATGGTT TGACTCGTCA CGCCGATGGC
CGTCAGGTTC CGGTTACCTT ATTCACTAAA GGTGGCGGTT TATGGTTAGA ATCAATGGCT
GAAACCGGCT GTGATGCACT TGGTCTGGAT TGGACTGTCG ATATCGGTGA TGCACGTCGC
CGTGTTGGTC ATAAAGTGGC CCTTCAAGGC AACATGGATC CATCGGTACT TTATGCTTCA
CCTGAGCGCA TCCATCAAGA GGTGGATCAG ATCCTATCAA GCTACGGCGA AGGTACGGGT
CACGTGTTCA ACTTGGGCCA TGGTATTCAC CAGCATGTCG ATCCAGAGCA CGCAGGTTCT
TTCATTAACT CTGTGCACGA GTTATCGGCT CAATACCACA AGTAA
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| Protein sequence | MAELKNDRYL RALLKQPVDR TPVWMMRQAG RYLPEYKATR AEAGDFMSLC KNQDLACEVT
LQPLRRYDLD AAILFSDILT VPDAMGLGLY FETGEGPRFQ RPTDTIDSIK KLCIPDPEDE
LGYVMRAVST IRRELKGEVP LIGFSGSPWT LATYMVEGGS SKTFEKIKKM AYEEPATLHL
LLDKLADSVI LYLNAQVANG AQSLMIFDSW GGALSHHAYR EFSLRYMQKI VDGLTRHADG
RQVPVTLFTK GGGLWLESMA ETGCDALGLD WTVDIGDARR RVGHKVALQG NMDPSVLYAS
PERIHQEVDQ ILSSYGEGTG HVFNLGHGIH QHVDPEHAGS FINSVHELSA QYHK
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