| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0438 |
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| Symbol | |
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| ID | 5611367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 540214 |
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| End bp | 542811 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931283 |
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| Product | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
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| Protein accession | YP_001472179 |
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| Protein GI | 157373579 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1049] Aconitase B |
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| TIGRFAM ID | [TIGR00117] aconitate hydratase 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00273099 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000849062 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTAGAAG CATATCGTAA ACACGTCGAA GAGCGTGCTT CAGAGGGCGT AGTCCCTAAG
CCACTAGATG CCCACCAAGT CGCCGAACTC GTTGAGCTGG TTAAGAACCC ACCTGCAGGA
GAAGAGGAGT TTATCCTGGA CCTGCTGGAA AATAGAATTC CACCAGGTGT CGATGAAGCC
GCCTATGTTA AAGCTGGTTT CCTGGATGCT GTCGCCAAAG GCGAAGCTAA GTCATCTATT
CTGTCATCGG CTCGCGCCGT TGAACTGCTT GGCACCATGC TGGGCGGCTA TAATATTCAA
CCGCTGATCG CTCAGCTTGA TGTTGCTGAG CAGGCGCCTT TAGCCGTTAC AGCCCTATCT
AAAACTCTGT TGATGTTTGA TGCTTTCCAC GATGTAGCTG AGAAGATGCA AGCCGGTAAT
GAGTTTGCCA AGCAGGTTGT TCACTCTTGG GCTGAGGCGC AGTGGTTTCT TAACCGCCCT
AAGCTTGAAG AGAAGATCTC TCTGACGGTA TTTAAAGTAT CAGGTGAGAC AAACACAGAT
GATTTGTCTC CAGCTCCCGA TGCGTGGTCA CGCCCGGATA TCCCACTGCA CGCTTTAGCT
ATGCTAAAAA ATACCCGTGA AGGTATTGTG CCCGATGAGG CCGGTGTGAT CGGTCCAATT
AAAGAAATTG ATCAGCTTAA AACTAAGGGC TTCCCATTAG TTTATGTTGG TGATGTTGTC
GGTACAGGTT CTTCACGTAA ATCTGCGACT AACTCGGTGC TTTGGTTCAT GGGTGATGAT
ATCCCTAATG TGCCAAACAA GCGTGCTGGC GGTTTCTGTC TGGGCGGTAA GATCGCACCA
ATCTTCTTCA ATACGATGGA AGATGCCGGT GCATTGCCTA TCGAACTCGA CGTTAGCAAG
ATGAACATGG GCGATGTTAT CGACATCTAC CCGTATCAGG GGGTCGTTAA GCGTCATGAC
AGCGATGAGG TTATCTCTGA GTTCGCTCTA AAAACTGACG TGTTAATGGA TGAAGTTCGT
GCTGGTGGTC GTATTCCATT GATTATCGGT CGTGGCCTGA CGGCTCGTGC CCGTGAAGTG
TTAAAGCTCG AAGCATCAAC AGTTTTCGTA TTACCACAAG ATGTGGCCGA TACAGGCAAA
GGTTATACCC TTGCTCAGAA GATGGTTGGT AAAGCTTGTG GCGTTACCGG TATCCGTCCT
GGTCAATATT GTGAGCCTAA GATGACCTCG GTTGGTTCGC AAGATACTAC CGGTCCTATG
ACTCGTGATG AGCTTAAAGA TCTTGCATGT CTTGGCTTCA GTGCCGACTT GACTATGCAG
TCTTTCTGTC ACACAGCGGC TTATCCTAAG CCGGTTGATG TGAATACGCA CCACACGCTA
CCTGATTTCA TCATGAATCG TGGTGGTGTA TCTTTGCGTC CTGGTGATGG TGTTATCCAC
TCTTGGTTAA ACCGTATGCT ACTGCCTGAT ACTGTCGGTA CCGGTGGTGA TTCACATACT
CGTTTCCCGT TAGGTATTTC GTTCCCGGCA GGTTCGGGCC TGGTGGCCTT CGCCGCCGCG
ACTGGCGTAA TGCCGCTCGA TATGCCTGAA TCAGTCTTGG TTCGTTTTAA AGGTGAAATG
CAGCCAGGTA TCACGTTACG TGATCTTGTC CATGCGATTC CGCATAAAGC GATCGAGCTG
GGTCTGCTAA CTGTTGAGAA GCAGGGTAAG ATTAACTTTT TCTCTGGCCG AGTTCTTGAA
ATTGAAGGCT TAGAAAGCTT GAAGGTTGAG CAGGCATTTG AATTGTCAGA CGCTTCTGCT
GAGCGTAGTG CTGCTGGTTG TAGTATTAAG CTTGATAAAG AGCCTGTCAT CGAATATCTG
AACTCTAACA TTGTGATGTT GAAGTGGATG ATAGCCGAAG GTTATGGCGA TCGTCGTACT
ATCGAGCGTC GTATTATTGC GATGCAAGAG TGGTTAGAAA ACCCAGAGTT GATGGAAGCT
GACAGCGATG CAGAATATGC CGCGGTTATC GAAATTGACT TGAATGACAT TAAAGAGCCA
ATCCTTTGTG CCCCTAACGA CCCTGATGAT GCAGTACTGC TATCAGAGGT TAAAGACACT
AAGATTGACG AAGTATTCGT GGGTTCTTGC ATGACTAATA TCGGTCATTT CCGTGCTACG
GGTAAGATGC TGGATAAGTT TGCTACAACG CTACCGACGC GTCTGTGGAT CACGCCTCCA
ACTAAGATGG ATCGTGATCA GCTTACCGAA GAGGGTTATT ACGCTATCTT CGGCCGCGTT
GGTGCGCGTG TTGAGATCCC TGGATGTTCT CTCTGTATGG GTAACCAGGC TCGTGTTGCC
GATGGTGCGA CAGTGGTTTC AACTTCGACT CGTAACTTCC CCAACCGTCT GGGTACAGGT
GCTAATGTTT ATTTGGCATC GGCTGAATTG GCTGCGGTTG CTGCACTCCT AGGTCGTCTG
CCAAGTTCTG ATGAGTATCA GGAGTATGCT AAGCAGTTAG ATGCAACGGC TGCCGATACC
TATCGTTATC TGAACTTCGA TAAGATGAGT TCTTATACTG AAAAAGCGGG CGAAGTTATC
TTCCAGTCTG CGGTATAG
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| Protein sequence | MLEAYRKHVE ERASEGVVPK PLDAHQVAEL VELVKNPPAG EEEFILDLLE NRIPPGVDEA
AYVKAGFLDA VAKGEAKSSI LSSARAVELL GTMLGGYNIQ PLIAQLDVAE QAPLAVTALS
KTLLMFDAFH DVAEKMQAGN EFAKQVVHSW AEAQWFLNRP KLEEKISLTV FKVSGETNTD
DLSPAPDAWS RPDIPLHALA MLKNTREGIV PDEAGVIGPI KEIDQLKTKG FPLVYVGDVV
GTGSSRKSAT NSVLWFMGDD IPNVPNKRAG GFCLGGKIAP IFFNTMEDAG ALPIELDVSK
MNMGDVIDIY PYQGVVKRHD SDEVISEFAL KTDVLMDEVR AGGRIPLIIG RGLTARAREV
LKLEASTVFV LPQDVADTGK GYTLAQKMVG KACGVTGIRP GQYCEPKMTS VGSQDTTGPM
TRDELKDLAC LGFSADLTMQ SFCHTAAYPK PVDVNTHHTL PDFIMNRGGV SLRPGDGVIH
SWLNRMLLPD TVGTGGDSHT RFPLGISFPA GSGLVAFAAA TGVMPLDMPE SVLVRFKGEM
QPGITLRDLV HAIPHKAIEL GLLTVEKQGK INFFSGRVLE IEGLESLKVE QAFELSDASA
ERSAAGCSIK LDKEPVIEYL NSNIVMLKWM IAEGYGDRRT IERRIIAMQE WLENPELMEA
DSDAEYAAVI EIDLNDIKEP ILCAPNDPDD AVLLSEVKDT KIDEVFVGSC MTNIGHFRAT
GKMLDKFATT LPTRLWITPP TKMDRDQLTE EGYYAIFGRV GARVEIPGCS LCMGNQARVA
DGATVVSTST RNFPNRLGTG ANVYLASAEL AAVAALLGRL PSSDEYQEYA KQLDATAADT
YRYLNFDKMS SYTEKAGEVI FQSAV
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