Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0435 |
Symbol | |
ID | 5611191 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 534359 |
End bp | 536614 |
Gene Length | 2256 bp |
Protein Length | 751 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931280 |
Product | patatin |
Protein accession | YP_001472176 |
Protein GI | 157373576 |
COG category | [R] General function prediction only |
COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00139608 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000000672418 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCCCGCCC TGTATCAATT AATAATTAAG AACCAATATC CTATGATACG TAATCTAATA TTTTTGCTGG TGGTCAGCTT TATCGCTGCT CCCGTCATGG CCGATGTCAG GCCAAAAGTT GGTTTGGTAC TCAGTGGGGG AGGCGCGAAG GGGGCGGCTC ATATTGGTGT ATTGAAGGTG CTCGAGGAGA ACAAGATTCC TGTCGACTAT ATCGCAGGAA CCAGCATCGG CGCATATGTC GCAGGCATGT ATGCCCTTGG ATACAGTGCT ATTGAGATTG AAAAGATCAT GATGACAGAG TCATGGTCAG ATGGATACTC AGATACGATT CCCAGAGAAT CATTGAGCTA TCGGAATAAG CAGCAAAGAG ACAGATTTAA TATCCCGGTG AATATGGGAT ATAGCGATGA TGAGATGAAA ATGCCCAACG GTCTCTTGCG TGGGCAAACC ATGTCTAAAC TTCTCCAGCG ATCCACGGGC TTAGTTCATC AGTTTGGTCA CTTCAATGAG TTAGCTATTC CTTACCGCGC CGTGGCAACG GATCTTGTAA CCAGTAAGGC CGTCGTTATC AATAATGGCA GTGTCGTCAA GGCCATGCAG GCTTCGGCTA CCGTTCCCGG CGCGCTCCAG CCGGTTGAAT ATGAAGGTAA GCTTCTCGTC GATGGCGGCA TCGCAAATAA TATGCCTATC GACGTGGTTA TGGGGATGGG AGCCGACATC ATAATTGCCG TCGATATCGG TTCATCTCTG GTGAAGAAAG AGGAGTTAAA TAGTACTGTC GCGGTATTGA ATCAGCTATC GACGATGTTG ACGAATGCCA GCTCTGAGAG ACAGAAATTG CTTCTTGGTA AAGGTGACAT TCTCATTCGT CCAAAAGTCG GTGATATGAG TACCACAGAC TTTTCAATCA TGCCTCAGGC TTATGCCTTG GGCGAATCGG CTGCGCTTGA GCATATTGAT TTACTTAAGC AATTGAGTGT CACCGAGTCT CAATACGCCA GCTATCAGCA AGCTAAAAAG CGCATAAGCA AAACCTGGCT CAATGAAGTC GACCACCCCT TAGTTGATAT TGTATTTAAT AATGAATCGA GAGTAAGTGA TTCTCTGTTG AGGGAGGCCT TCGGAATTCA CCCTGGTGAG GTCGTTACCA CAGAGCGACT CGAGCAAGGC ATTGCCAATG TATATGCCCT GGACAAGTTT GAGCTGGTTA ATGCGGAATT TTCCGATACA GAACAGGGAC GTGTGCTGAC CTTAAATACC AAGTCTAAAT CATGGGGGCC TAATTATTTT CAACTGGGCT TCAGCTGGGA AGATGACTTC TCTCTGGACT CTGTCGTGTC CTTGGATCTG GCCTATACAC TCACCGATAT CACTGATACA GGTGGTGAGT GGCGTAATGA ATTAAGGCTC GGTTTTGAGA AGTTAATCGC CACCGAGTTT TATCTGCCTC TGGATTATGA TCAAGAGTTC TTTAGCCGGG CCAAATTAGC TTATGAGCAA AAAGACTGGG ACTTCTATGA GCAAAACGCT AAAACACTGC AGTTATCTCA GACTCAATAC AGGGCCGATA TTGGTATTGG CTATAACTTT GTAAAAGAGG GCATGGTTGA GCTGGGAATA ACGGGTGAAA AGGGAGTTTT AGAAAATAAG GCTATAATTG ATGAGCTTAA ATATGAAACC TATGGTGCTT ACTTTAAGTT TGGTTTCGAT GATCTCAACA GTATTAACTT CCCGACCTCC GGTAATCGAT TTACCTTAAA CCTCTATTAC AGAAACGAGT CGGCGCCCGA TTTTTTAGGT TTTGACACTA ACGAGAACTC CTTTCAGATC GAGGCGGATT GGCGCGGTGC ATTAAGTTTT GGTAATCATG CTTTCGTAGG AATAGCGTCA TTGGCTACCG TCGATAAAGA TGACAGCTTC AGCGTGCATG TGTCTGAGCT TGGTGGCTTC CTGAATCTAT CGGGTTATCA CAAAAATGCG CTCGTTGGCG CTCATAAGGT GTTTGGTGCC TTCGTCTATC AGTACGATCT GGGACGAGAT GTGTTAGGGA TGACAGATTA TCCCCTCTAC CTGGGTACGA GTATCGAGGC GGGTAACGTT TGGGAGTACA GAGATGGGGT GGATCTCGAT GATCTTATCT ATTCCGGCAG TTTATATTTC GGTACAGATA CCTCTATGGG CCCCGCCGCA TTAGGTTTTG GCTGGGCCGA TGATGGTGAG ATGACAATAT TTATATTTAT TGGAAAGAAC TGGTAA
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Protein sequence | MPALYQLIIK NQYPMIRNLI FLLVVSFIAA PVMADVRPKV GLVLSGGGAK GAAHIGVLKV LEENKIPVDY IAGTSIGAYV AGMYALGYSA IEIEKIMMTE SWSDGYSDTI PRESLSYRNK QQRDRFNIPV NMGYSDDEMK MPNGLLRGQT MSKLLQRSTG LVHQFGHFNE LAIPYRAVAT DLVTSKAVVI NNGSVVKAMQ ASATVPGALQ PVEYEGKLLV DGGIANNMPI DVVMGMGADI IIAVDIGSSL VKKEELNSTV AVLNQLSTML TNASSERQKL LLGKGDILIR PKVGDMSTTD FSIMPQAYAL GESAALEHID LLKQLSVTES QYASYQQAKK RISKTWLNEV DHPLVDIVFN NESRVSDSLL REAFGIHPGE VVTTERLEQG IANVYALDKF ELVNAEFSDT EQGRVLTLNT KSKSWGPNYF QLGFSWEDDF SLDSVVSLDL AYTLTDITDT GGEWRNELRL GFEKLIATEF YLPLDYDQEF FSRAKLAYEQ KDWDFYEQNA KTLQLSQTQY RADIGIGYNF VKEGMVELGI TGEKGVLENK AIIDELKYET YGAYFKFGFD DLNSINFPTS GNRFTLNLYY RNESAPDFLG FDTNENSFQI EADWRGALSF GNHAFVGIAS LATVDKDDSF SVHVSELGGF LNLSGYHKNA LVGAHKVFGA FVYQYDLGRD VLGMTDYPLY LGTSIEAGNV WEYRDGVDLD DLIYSGSLYF GTDTSMGPAA LGFGWADDGE MTIFIFIGKN W
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