Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0433 |
Symbol | |
ID | 5611189 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 528266 |
End bp | 529693 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931278 |
Product | dihydrolipoamide dehydrogenase |
Protein accession | YP_001472174 |
Protein GI | 157373574 |
COG category | [C] Energy production and conversion |
COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00000206937 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTAACG AAATCAAAAC TCAGGTATTG GTAGTAGGTG CAGGTCCTGC TGGTTATTCA GCGGCATTTC GTGCGGCTGA TTTAGGTCTG GAAGTCATCA TCGTTGAGCG TTTCAACACG CTTGGTGGTG TATGTTTGAA TGTAGGCTGT ATCCCATCAA AAGCGCTGCT TCACGTATCT AAAGTGATCG AAGAGGCGAA AGCGGTTGCG AGCCACGGTG TTGTTTTTGG TGAGCCGCAA ATTGATCTTG ATAAGCTTCG TAGCTTTAAA GAAACGGTGA TTAGTCAGCT AACCACAGGT TTGGGCGGAA TGTCCAAGAT GCGTAAGGTT GATGTTGTTA ATGGTTTTGG TAAGTTTACC AGCCCTAATA CCATTGAAGT TACGGGTGAA GATGGCGTTA AAGTTATTCG CTTCGAACAA GCCATTATTG CCGCGGGTTC ACGTCCTATT CAATTGCCAT TTATCCCACA TGAAGACCCA CGTATCTGGG ATTCGACCGA TGCGCTAGAG CTTAAAGAAG TACCTGGAAA GCTACTTGTT ATGGGTGGTG GTATTATCGG CCTCGAGATG GGGACAGTAT ACTCGTCACT GGGTAGTGAG ATTGACGTGG TTGAGATGTT TGACCAGGTT ATTCCTGCCG CTGACAAAGA TATCGTTCGT GTTTACACTA AGAAGATTAA GAAGAAATTT AATCTTATCT TACAGACTAA AGTTACCGCC GTTGAAGCTA AAGAAGATGG TATCTATGTG TCTATGGAAG GTAAGAAAGC GCCTGCGGAA CCTGTACGTT ACGATGCCGT GCTTGTGGCA ATTGGCCGTA CGCCAAATGG CAAGCTGATT GATGCAGAAA AAGCGGGCGT TAATATCGAT GAGCGTGGTT TCATCAATGT CGATAAGCAG ATGCGCACTA ACGTGCCAAA CATCTATGCT ATCGGCGATA TCGTTGGCCA GCCAATGCTT GCGCATAAAG GTGTACATGA AGGTCACGTT GCCGCAGAAG TTATCTCTGG TCTTAAGCAT TTCTTCGATC CTAAGGTTAT CCCATCAATT GCCTATACCG ACCCTGAGGT CGCGTGGGTA GGTTTAACTG AGAAAGAAGC GAAAGAGCAA GGCGTTGCTT ATGAAACGGC TACTTTCCCA TGGGCCGCAA GTGGGCGTGC TATCGCATCA GACTGTAGCG ATGGTATGAC TAAGCTTATC TTCGATAAAG AGACACACCG TGTGATCGGT GGTGCTATCG TAGGCGTTAA CGGTGGTGAG CTATTGGGTG AAATCGGCCT TGCTATCGAG ATGGGTTGTG ATGCTGAAGA CTTAGCGTTG ACTATTCACG CTCACCCAAC CCTACATGAA TCAGTTGGTT TGGCCGCTGA AATCTATGAA GGTTCTATAA CTGATTTGCC TAATCCAAAA GCAAAAAAGA AAAAGTAA
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Protein sequence | MSNEIKTQVL VVGAGPAGYS AAFRAADLGL EVIIVERFNT LGGVCLNVGC IPSKALLHVS KVIEEAKAVA SHGVVFGEPQ IDLDKLRSFK ETVISQLTTG LGGMSKMRKV DVVNGFGKFT SPNTIEVTGE DGVKVIRFEQ AIIAAGSRPI QLPFIPHEDP RIWDSTDALE LKEVPGKLLV MGGGIIGLEM GTVYSSLGSE IDVVEMFDQV IPAADKDIVR VYTKKIKKKF NLILQTKVTA VEAKEDGIYV SMEGKKAPAE PVRYDAVLVA IGRTPNGKLI DAEKAGVNID ERGFINVDKQ MRTNVPNIYA IGDIVGQPML AHKGVHEGHV AAEVISGLKH FFDPKVIPSI AYTDPEVAWV GLTEKEAKEQ GVAYETATFP WAASGRAIAS DCSDGMTKLI FDKETHRVIG GAIVGVNGGE LLGEIGLAIE MGCDAEDLAL TIHAHPTLHE SVGLAAEIYE GSITDLPNPK AKKKK
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