| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0432 |
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| Symbol | |
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| ID | 5610075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 526474 |
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| End bp | 528111 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931277 |
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| Product | dihydrolipoyllysine-residue succinyltransferase |
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| Protein accession | YP_001472173 |
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| Protein GI | 157373573 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000010678 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGAAT TAAAAGAAGT TTTAGTCCCC GATATCGGTG GTGACGATGT ACAGGTAATT
GAGATCTGTG TTGCTGTTGG TGATCAACTT GCAGCCGAAG AGTCAATTAT TACCGTAGAA
AGTGACAAGG CGACCATGGA CATTCCAGCG CCTTTTGCCG GCACGTTAGC CGAGCTTAAA
ATAGCCGTCG GTGACACCGT CTCTGAAGGC ACCTTGATTG CTATGATGTC TGCGCAAGGT
GCAAGCACTG AAGTTACTGC GGCAACAGCG GCTCCAGAGC CGACTCCGGT TGCGCCAGCA
GCACCTGTTG ATGCAGCTCC TGTTCCGGCT TCTACTGCTA CACAAGTTAT TGAAGTCAAG
GTGCCCGATA TTGGTGATGC GGCCGATGTC GAAATCATCG AAGTGCTGGT GGCCGTGGGT
GACAGCATAG ATGTCGATAC CGGGTTGATC ACCCTGGAAA CCGATAAAGC CACGATGGAG
GTGCCTGCAC CTTCAGCCGG TGTGGTGAAA GAGTTAAAAG TAGCCGTTGG TGATAAAGTT
TCTGAAGGTT CGCTTGTGCT TATGTTGGAA GTTGGTGCTT CAGCACCAGC AGCGATAGTG
GCTCCGGTTG AAGCCCCAGT TGTAGCTCCT GTAGCTCAAC CAGCTCAGGC CGCGACAAGC
AAGCCTCCGG TTCCGCATCA TCCAAGTGCA GGCAGTAAGC CTGTCACCGG AGCGGTACAC
GCTTCACCAG CCGTTCGTCG TCTGGCTCGT GAGTTCGGCG CAGATATGAC CTTAGTTAAA
GGTACGGGCC GCAAAGGTCG TATCCTTAAG GAAGACGTTC AGGCGTTCAT TAAATATGAG
CTTAGCCGTC CTAAGGCATC TGCAGCGACA GCCGTTGCTG GTGGTGCGGG TGGACTCAAT
GTTATTGCTG CACCTAAAGT CGATTTTGCT AAGTTTGGTG AAATCGAGGA AGTGCCCCTA
ACACGTATTC AGAAGATCTC TGGTCCGAAC CTGCATCGTA ACTGGGTCAC CATTCCGCAT
GTGACGCAAT TCGACGAAGC CGATATCACC GAGATGGAAG CATTCCGTAA GCAGCAAAAT
GAACTTGCAG CTAAGCGTAA GACAGGTATT AAGATCACGC CGCTTGTCTT TATGATGAAA
GCCGTTGCCA AGACCCTACA GGCTTTCCCT GTGTTTAATG CCAGCCTAAG TGCCGATGGT
GAGTCTTTAA TTAAGAAGAA GTATTACCAT ATAGGTGTTG CGGTTGATAC GCCAAACGGC
CTAGTGGTTC CGGTTGTTCG TGATGTTGAT AAGAAAGGTA TTCACGAACT GACTCAAGAG
TTGACTGAGA TCTCGATTAA AGCACGTGAT GGTAAGCTTA AGTCTGCAGA TATGCAGGGC
AGTTGTTTCA CTATCTCGAG TCTGGGTGGT ATCGGTGGTA CGGCATTTAC GCCTATCGTC
AATTACCCGG ATGTGGCTAT TTTAGGTGTA TCTAAGTCAG AGATTAAACC AAAGTGGAAT
GGTAAAGATT TTGAGCCTAA GCTAATGTTG CCGCTATCTC TCTCTTATGA TCACAGGGTG
ATCGACGGGG CGATGGCAGC GCGCTTTAGC GTGACACTGT CAAGTATGCT GTCCGACATA
CGGACGCTTA TTTTGTAA
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| Protein sequence | MSELKEVLVP DIGGDDVQVI EICVAVGDQL AAEESIITVE SDKATMDIPA PFAGTLAELK
IAVGDTVSEG TLIAMMSAQG ASTEVTAATA APEPTPVAPA APVDAAPVPA STATQVIEVK
VPDIGDAADV EIIEVLVAVG DSIDVDTGLI TLETDKATME VPAPSAGVVK ELKVAVGDKV
SEGSLVLMLE VGASAPAAIV APVEAPVVAP VAQPAQAATS KPPVPHHPSA GSKPVTGAVH
ASPAVRRLAR EFGADMTLVK GTGRKGRILK EDVQAFIKYE LSRPKASAAT AVAGGAGGLN
VIAAPKVDFA KFGEIEEVPL TRIQKISGPN LHRNWVTIPH VTQFDEADIT EMEAFRKQQN
ELAAKRKTGI KITPLVFMMK AVAKTLQAFP VFNASLSADG ESLIKKKYYH IGVAVDTPNG
LVVPVVRDVD KKGIHELTQE LTEISIKARD GKLKSADMQG SCFTISSLGG IGGTAFTPIV
NYPDVAILGV SKSEIKPKWN GKDFEPKLML PLSLSYDHRV IDGAMAARFS VTLSSMLSDI
RTLIL
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