| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0429 |
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| Symbol | |
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| ID | 5613718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 521706 |
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| End bp | 522557 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931274 |
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| Product | regulatory protein AmpE |
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| Protein accession | YP_001472170 |
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| Protein GI | 157373570 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG3725] Membrane protein required for beta-lactamase induction |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000942425 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCATTAT TTTCTTTATT AGTGGCTATT ATTGTCGAGC GGTTGAAGCT TTTGCCGAAA
AGTTGGCAGC TCGAGTCATT CTTAAGCGTT TATTCTAATA GTCTCTTTGG TGAGAAGCAG
CTTAATTCTG AAGTAATGAT GGCTTTGGCT CTGGTGTTAC CCGCTGTCGC TGTTCAAGTT
GCCACGTGGG CCGTTGCCGG CCTATTTTGG GGCGCGTTAA GCCTATTGCT CTGGGTCGCA
GTTTCAATAC TCTGTTTCAG TCACCTAAAG CAGAGACAGA CGTTTAAACG CTATATGCAA
GCCGCGTGTC GGGGAGACTC CCAAGCCTGT TATCACTTTG CCGAAGAGCT GGATTGTAAC
AGGTCGATTG AAGCTGTTTC CGAAGGGGAC TTAGGCGCTA AGGTTGGCCA AAGTGTCGCT
TGGTTAAATT ACCGCTTCTA TGGTGCTGTT GCTCTCTTTC TCATTTTTTT TGGACCCGCA
GGAGCCGTTT TCTATTGCAC CGTTCGATAC TTCTCAGACG AAAATCATCA AAAGTTACTC
GAGCAACCCT TGGTTGGACA GGTACTCACA CTGCTGGACT GGCTTCCAAG TCGGGTGTTT
GCATTTGGAT ATGTACTTAG TGGCCAGTTT TCACAGGCCT TTGCAAGCTG GAGAGAGTTC
GGTTTTAGTT TAAAATATGG TGCCAGAGAG GTCGTGACTC AGGTTGCTCT GGCTGCCGAG
CCTAGTCCCG AACCATCTGC TAAGCCAATT TGCGTGCAGG CTACCTTAGC GCTGCTACAA
TTGAGCAAGC GTAACTTTAT TCTTCTGCTT ACCACTCTGT CTTTATTGAC CATATTTGGG
GTCGTGGCTT AG
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| Protein sequence | MALFSLLVAI IVERLKLLPK SWQLESFLSV YSNSLFGEKQ LNSEVMMALA LVLPAVAVQV
ATWAVAGLFW GALSLLLWVA VSILCFSHLK QRQTFKRYMQ AACRGDSQAC YHFAEELDCN
RSIEAVSEGD LGAKVGQSVA WLNYRFYGAV ALFLIFFGPA GAVFYCTVRY FSDENHQKLL
EQPLVGQVLT LLDWLPSRVF AFGYVLSGQF SQAFASWREF GFSLKYGARE VVTQVALAAE
PSPEPSAKPI CVQATLALLQ LSKRNFILLL TTLSLLTIFG VVA
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