Gene Ssed_0428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0428 
Symbol 
ID5613717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp520949 
End bp521566 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content47% 
IMG OID640931273 
ProductN-acetyl-anhydromuranmyl-L-alanine amidase 
Protein accessionYP_001472169 
Protein GI157373569 
COG category[V] Defense mechanisms 
COG ID[COG3023] Negative regulator of beta-lactamase expression 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.935847 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000848946 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCTCAC ACATAAAAAC TTCTCCCCCG GTAACAGCGC AAGAGCGCTC CCCTACGGAT 
AATGATATTT GTCTGGAAAA GCGCTGTGCC GATGGGTGGA TAAATGATGC CAGGCGGTGT
GAGTCCCCGC ATTTTAACCA CCGCCCGTTG AATGAGGTTA GCTTGTTGGT TATACATAAC
ATCAGCCTTC CTGCTGGCTG TTTCGGTGAA TCTTATATAG ACCAATTGTT TAAGGGGTGT
CTGGATGTCA GTGCTGACGC CAGCTTTATC GACCTTAAGG GGCTTGAGGT GTCTGCTCAC
TTCCTTATTC GGCGAGATGG CGAATTAGTA CAATATGTGT CATGTGGTGA TCGTGCCTGG
CATGCCGGGG TATCCAGCTA TGGCTCTCGA GAAGGGTGTA ATGATTTTGC AATTGGTATT
GAACTGGAAG GGACCGATAC TCTGGCCTAT ACCGAGCAGC AGTACCGGGA GTTGAAAATA
CTAACCCTTG CCTTGTTCGA CGCATATCCT ATGCTAAATA TTGATAGAGT CGTGGGTCAT
TGTGATATTG CGCCTGGCCG TAAAACAGAT CCCGGTGAAA GCTTTGATTG GCAACGATTT
AAAAAAGATT TAAGTTAA
 
Protein sequence
MSSHIKTSPP VTAQERSPTD NDICLEKRCA DGWINDARRC ESPHFNHRPL NEVSLLVIHN 
ISLPAGCFGE SYIDQLFKGC LDVSADASFI DLKGLEVSAH FLIRRDGELV QYVSCGDRAW
HAGVSSYGSR EGCNDFAIGI ELEGTDTLAY TEQQYRELKI LTLALFDAYP MLNIDRVVGH
CDIAPGRKTD PGESFDWQRF KKDLS