| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0423 |
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| Symbol | |
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| ID | 5611220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 514459 |
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| End bp | 515370 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931268 |
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| Product | prepilin peptidase |
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| Protein accession | YP_001472164 |
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| Protein GI | 157373564 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00039468 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAGAAT TTATCTCCAT ATTGAGCCAG AACCTTTGGC TCTTCAGTAT TATCAGTTTT
ATTTTTTCGG CTGTCATAGG CAGTTTTCTT AATGTGGTAA TACACCGCTT CCCCGTCATG
TTAAAGCGTG AATGGCAGCA AGAGTGTAAT CAGTATTTGA ACGAATACCA CGAAAAGCTG
ATAGCGCCCA TTTCGGAGCA ACTTAACAAT CCCATCGATG ACTACCCCGA GAGATACAAT
TTAGTCGTTC CTGCTTCTGC ATGCCCGAAG TGTAAAACAA ACATCAAACC ATGGCACAAC
CTACCGATTG TCGGTTGGCT GATGCTGAAA GGAAAATGTG CGGCGTGTGG TACCAGTATT
TCGCCCAGAT ATCCAATTAT CGAGCTCCTC ACCGGGCTGG CTGTAGCATT GCTTGCATAT
CATTTCGGGC CTGGCTGGGA ATTCATTTTT GCGACGGTAC TGACATTTGT TTTAATAGCC
CTAACAGGTA TTGATCTGGA TGAAATGTTA CTGCCAGATC AGCTCACCCT TCCTCTACTC
TGGCTTGGCT TACTGATAAA TCTGAATGGT ACCTTTGCGT CACCGACCGA TGCAATGATC
GGTGCTGCGG CTGGCTATTT AAGCCTCTGG AGTGTCTTCT GGGCCTTTAA GCTTTTAACG
GGTAAGGAAG GCATGGGATA TGGTGATTTT AAACTATTAG CCGTTTTCGG AGCCTGGTTT
GGTTGGCAGA TGTTACCACT CATTATTTTA TTATCATCGC TGGTTGGCGC AATAGTCGGT
ATAGGCTTGA TAGTAACCAA GAAGATAAAT AAAACTAACC CAATTCCTTT CGGCCCATAT
ATAGCAGCAG CAGGTTGGAT CGCCATGATC TGGGGCTCCG ATATTACAAA CTGGTACCTT
TCTACACTGT AA
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| Protein sequence | MSEFISILSQ NLWLFSIISF IFSAVIGSFL NVVIHRFPVM LKREWQQECN QYLNEYHEKL
IAPISEQLNN PIDDYPERYN LVVPASACPK CKTNIKPWHN LPIVGWLMLK GKCAACGTSI
SPRYPIIELL TGLAVALLAY HFGPGWEFIF ATVLTFVLIA LTGIDLDEML LPDQLTLPLL
WLGLLINLNG TFASPTDAMI GAAAGYLSLW SVFWAFKLLT GKEGMGYGDF KLLAVFGAWF
GWQMLPLIIL LSSLVGAIVG IGLIVTKKIN KTNPIPFGPY IAAAGWIAMI WGSDITNWYL
STL
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