Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0417 |
Symbol | |
ID | 5611029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 487046 |
End bp | 487945 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931249 |
Product | peptidase M23B |
Protein accession | YP_001472158 |
Protein GI | 157373558 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000018485 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000198891 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTGTAA CAGTTTTTAT TCAAGGTCGA AATGGCGCCT CTCGATGGCA GCCTGGTAAA CGTTGGCTGT TGTTACCTGT TCTATTAATA GCAGCAGGTT CAGGGCTATA TCAGCACAGC GCCAAACAAA TTCTGCAACA GCAGACCAAT GTCGATAATG AGCGAGTTGC GCGTGAAGCG CAAAAAAATG AGCTCATAGA GCTTAAAGGT GCGACAGAAG CCCAACTGGC TATGCTCGTA ACTCACGTTG CCCGCATACA AGCGAAGGTG ACTCGTCTTG AAGCTCTCGG TCAGCAAGTT GCAAAAAATA ATCAATTAGA AGATCAATTT GATTTCTCTT CCGAAGTCGG TGTGGGTGGC CTGAGTGAAT TAGGTGCCAA TATCGAGCTC GACCAGCTTA TCGCAGACAT GGATAAGTTA GTATCACGAA TAGATAACAA TAATGTTCAA CTTTCAATAC TTGAAACAGT ATCATCTAAT CTCCATATAG ATGAAGAACG TTATATATCT GGGCGGCCCA TCCAAAAAGG ATGGTTATCA TCGCCCTACG GTTTACGAAA TGACCCTTTT AATGGACGGA GGACTTTGCA TAAAGGCATC GACTTCGCCG GAAAAGAGGG AACCAATGTG GTCGCTACCG CTGGCGGCGT GATCACATGG GCAGGCAAAA TGTTTGGCTA TGGTGAGCTT GTAGAGATAG ATCATGGAAA TGGTTTACGA ACTCGTTATG GACACAATAA GTCTTTGTTA GTAACCGTAG GTGATGTTAT CGCCAAAGGC GAGAATATCG CCAAAATGGG AAGTACCGGG CGCTCGACCG GACCCCATGT GCATTATGAA GTGTTGCGGG GTGGACAGCA GATAGATCCG CAGAAATTTG TCTACCGCAA AGCAGGTTAA
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Protein sequence | MSVTVFIQGR NGASRWQPGK RWLLLPVLLI AAGSGLYQHS AKQILQQQTN VDNERVAREA QKNELIELKG ATEAQLAMLV THVARIQAKV TRLEALGQQV AKNNQLEDQF DFSSEVGVGG LSELGANIEL DQLIADMDKL VSRIDNNNVQ LSILETVSSN LHIDEERYIS GRPIQKGWLS SPYGLRNDPF NGRRTLHKGI DFAGKEGTNV VATAGGVITW AGKMFGYGEL VEIDHGNGLR TRYGHNKSLL VTVGDVIAKG ENIAKMGSTG RSTGPHVHYE VLRGGQQIDP QKFVYRKAG
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