| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0415 |
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| Symbol | lpxC |
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| ID | 5611027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 485604 |
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| End bp | 486524 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931247 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | YP_001472156 |
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| Protein GI | 157373556 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000018683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000547642 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTTTTC AAAGAACTGT TAAAGAAATG GTTAAAACCA CTGGAGTCGG ATTGCATTCC
GGCAATAAGG TGACTTTGAG CATCAAACCC GCACCCGTTA ATACAGGTAT CGTACTCGTG
CGCACCGATC TTGAACCTGC AGTGGCTATT CCAGCCAAAG CCGATTTAGT TCGTGAAACG
ACTATGTGTA CGGCACTTGT CAATGATGAA GGTGTACGTA TCTCAACAAT TGAGCATCTG
TTCGCAGCCC TTGCGGGCCT TGGTATCGAC AACGCCGTTA TTGAAGTCGA TGCCCCGGAG
ATCCCAATCA TGGATGGCAG CGCCAGCCCA TGGGTATTCC TACTTCAATC AGTAGGGATT
CAAGAGCAAG CGTCGGCTAA GAAATACCTG AGAATCAAAA ATACTGTGCG TGTTGAAGAT
GGTGATAAAT GGGCTGAACT AAAACCCTTT AAAGGTTTTA GAGTCGATTT TGCAATCGAC
TTTAATCACC CCGAAATCGC CCGTAGTCAA CAACACATGG TAATGGATTT TTCTACTTCA
GCATTTGTGC GCGATATAAG TCGAGCGAGA ACATTCGGCT TTATGCGTGA TATCGAATAC
TTGAGAGCTA ACAATTTAGC CCTGGGTGGA AGTATGGAAA ATGCAGTTGT GCTTGACGAA
TATCGTGTCC TCAACCCCGA TGGTCTGCGT TATGAGGATG AATTCGTTAA ACATAAGATT
TTAGATGCTT TCGGTGATCT CTATGTTGCT GGTTATGCCA TTGTTGGTGA ATTCTGTGCA
TTCAAAACCG GGCATGCATT AAATAACCAA TTAGTGCGCG CCTTGTTAGC GCAGCAAGAT
GCCTGGGAGC TTGTCAGCTT CGAAAAAGAC GAAGCACCTG TGAGCTTCTC TGTACCAACA
GGTGCAGCAG TGTTCACTTA A
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| Protein sequence | MIFQRTVKEM VKTTGVGLHS GNKVTLSIKP APVNTGIVLV RTDLEPAVAI PAKADLVRET
TMCTALVNDE GVRISTIEHL FAALAGLGID NAVIEVDAPE IPIMDGSASP WVFLLQSVGI
QEQASAKKYL RIKNTVRVED GDKWAELKPF KGFRVDFAID FNHPEIARSQ QHMVMDFSTS
AFVRDISRAR TFGFMRDIEY LRANNLALGG SMENAVVLDE YRVLNPDGLR YEDEFVKHKI
LDAFGDLYVA GYAIVGEFCA FKTGHALNNQ LVRALLAQQD AWELVSFEKD EAPVSFSVPT
GAAVFT
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