Gene Ssed_0406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0406 
Symbol 
ID5612355 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp474389 
End bp475756 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content49% 
IMG OID640931238 
ProductUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase 
Protein accessionYP_001472147 
Protein GI157373547 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0770] UDP-N-acetylmuramyl pentapeptide synthase 
TIGRFAM ID[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000724164 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATCCCGT TAACGTTATT GCAATTGAGC CATCGATTAG ATGCGCGCCT CATCGGTCCT 
GATACCGAAA TTGCCTATGT TTGCAGTGAT AGTAGAAGCA TTCCGCCCCA GACTTTGTTT
GTTGCACTGA AAGGCGAGAG ATTCGACGGC CATGACTTCG CTCATTTAGC GGTCGAAAAT
GGCGCTAATG CGCTTCTGGT GACCCATGAA TTACCTCTGG ATCTCCCCCA ACTGATAGTG
AAAGACACTC AGAAAGCCAT GGGAGAGATA GGGGCATACC TGCGAGAAGT CATTCAGCCT
AAGTCGATAG CGCTAACCGG TTCAAATGGA AAAACAAGTG TGAAAGAGAT GGTCGCGACC
ATCCTCTCCC AGAGACATAA GGTGCTCTAC ACTGCCGGCA ATTTTAATAA TGAAATTGGT
GTCCCCCTTA CCCTGCTTCG TTTGGAGGAG GGAGATGAGT TTGGTGTGTT CGAACTTGGG
GCGAATCATC GCGGCGAGAT CGACTACACC TCGTCACTGG TTAAGCCTGA TGTTGCTTTA
GTCAACAATG TTGCCTCGGC TCACCTCGAA GGCTTTGGTT CATTAGCCGG GGTCGCAGCT
GCCAAGTCTG AGATATTTAA TCATCTGAGC CCTGACGGGA CGGCAGTGAT TAATGCCGAT
GATTCATTCG CTCGGGTGAT GAAAGAGGCG GCAAGTGAAC ATAAGCAGCT AACTTTTGCT
ATCGAAGCTG CAGCCGATCT TCAAGGAAGC GGGCTCGAAC CCGATCTGCT GGGTCGCTAT
TGCTTCAAGA TGAGTTACCT GAACCAAGAA GTTTCGGTGA CATTGCCCTT GTCTGGTCGC
CATCAAGTGA GCAATGCTCT GGCAGCCGCA GGGATCTGTT TAACCTTGGG CCTGCCTCTG
AGTGAGATCG TTTCAGGCTT GTCTTTGCTC GAGCCGGTGA AAGGTAGAAT GTTACCAACT
CAGCTCGGTC GGGTGCGAGT GATTGACGAT AGTTATAACG CAAATCCTGC ATCGGTTAGC
GCTGCAATTG ACTGGCTTCA AGAAATTGAT GGATATCGCT GTTTAGTGCT GGGTGATTTG
GGAGAATTAG GCGACAATGC GTCCCTTTTG CATACTGAGC TGGGTGAGCT TGCAAAAATA
AGAGGGATAG AAGCACTGTT CTCATTGGGT GAACTAAGCG CAAATGCCAG TACCGCCTTT
GGTGGTGTTC ATCATCAAGA GTTAGAACAA GTAGTAAATA ATTTAGTTAA TCATATTAAT
CAGTTGCAAG GTGATGTGAC GGTTTTAGTC AAGGGCTCAC GCAGTGCCAA AATGGAACGC
GTGGTTGAGG CCTTAATAGT TGCCTATGGG CGCGGGGAGT TTGTTTAA
 
Protein sequence
MIPLTLLQLS HRLDARLIGP DTEIAYVCSD SRSIPPQTLF VALKGERFDG HDFAHLAVEN 
GANALLVTHE LPLDLPQLIV KDTQKAMGEI GAYLREVIQP KSIALTGSNG KTSVKEMVAT
ILSQRHKVLY TAGNFNNEIG VPLTLLRLEE GDEFGVFELG ANHRGEIDYT SSLVKPDVAL
VNNVASAHLE GFGSLAGVAA AKSEIFNHLS PDGTAVINAD DSFARVMKEA ASEHKQLTFA
IEAAADLQGS GLEPDLLGRY CFKMSYLNQE VSVTLPLSGR HQVSNALAAA GICLTLGLPL
SEIVSGLSLL EPVKGRMLPT QLGRVRVIDD SYNANPASVS AAIDWLQEID GYRCLVLGDL
GELGDNASLL HTELGELAKI RGIEALFSLG ELSANASTAF GGVHHQELEQ VVNNLVNHIN
QLQGDVTVLV KGSRSAKMER VVEALIVAYG RGEFV