Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0406 |
Symbol | |
ID | 5612355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 474389 |
End bp | 475756 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640931238 |
Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase |
Protein accession | YP_001472147 |
Protein GI | 157373547 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000724164 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATCCCGT TAACGTTATT GCAATTGAGC CATCGATTAG ATGCGCGCCT CATCGGTCCT GATACCGAAA TTGCCTATGT TTGCAGTGAT AGTAGAAGCA TTCCGCCCCA GACTTTGTTT GTTGCACTGA AAGGCGAGAG ATTCGACGGC CATGACTTCG CTCATTTAGC GGTCGAAAAT GGCGCTAATG CGCTTCTGGT GACCCATGAA TTACCTCTGG ATCTCCCCCA ACTGATAGTG AAAGACACTC AGAAAGCCAT GGGAGAGATA GGGGCATACC TGCGAGAAGT CATTCAGCCT AAGTCGATAG CGCTAACCGG TTCAAATGGA AAAACAAGTG TGAAAGAGAT GGTCGCGACC ATCCTCTCCC AGAGACATAA GGTGCTCTAC ACTGCCGGCA ATTTTAATAA TGAAATTGGT GTCCCCCTTA CCCTGCTTCG TTTGGAGGAG GGAGATGAGT TTGGTGTGTT CGAACTTGGG GCGAATCATC GCGGCGAGAT CGACTACACC TCGTCACTGG TTAAGCCTGA TGTTGCTTTA GTCAACAATG TTGCCTCGGC TCACCTCGAA GGCTTTGGTT CATTAGCCGG GGTCGCAGCT GCCAAGTCTG AGATATTTAA TCATCTGAGC CCTGACGGGA CGGCAGTGAT TAATGCCGAT GATTCATTCG CTCGGGTGAT GAAAGAGGCG GCAAGTGAAC ATAAGCAGCT AACTTTTGCT ATCGAAGCTG CAGCCGATCT TCAAGGAAGC GGGCTCGAAC CCGATCTGCT GGGTCGCTAT TGCTTCAAGA TGAGTTACCT GAACCAAGAA GTTTCGGTGA CATTGCCCTT GTCTGGTCGC CATCAAGTGA GCAATGCTCT GGCAGCCGCA GGGATCTGTT TAACCTTGGG CCTGCCTCTG AGTGAGATCG TTTCAGGCTT GTCTTTGCTC GAGCCGGTGA AAGGTAGAAT GTTACCAACT CAGCTCGGTC GGGTGCGAGT GATTGACGAT AGTTATAACG CAAATCCTGC ATCGGTTAGC GCTGCAATTG ACTGGCTTCA AGAAATTGAT GGATATCGCT GTTTAGTGCT GGGTGATTTG GGAGAATTAG GCGACAATGC GTCCCTTTTG CATACTGAGC TGGGTGAGCT TGCAAAAATA AGAGGGATAG AAGCACTGTT CTCATTGGGT GAACTAAGCG CAAATGCCAG TACCGCCTTT GGTGGTGTTC ATCATCAAGA GTTAGAACAA GTAGTAAATA ATTTAGTTAA TCATATTAAT CAGTTGCAAG GTGATGTGAC GGTTTTAGTC AAGGGCTCAC GCAGTGCCAA AATGGAACGC GTGGTTGAGG CCTTAATAGT TGCCTATGGG CGCGGGGAGT TTGTTTAA
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Protein sequence | MIPLTLLQLS HRLDARLIGP DTEIAYVCSD SRSIPPQTLF VALKGERFDG HDFAHLAVEN GANALLVTHE LPLDLPQLIV KDTQKAMGEI GAYLREVIQP KSIALTGSNG KTSVKEMVAT ILSQRHKVLY TAGNFNNEIG VPLTLLRLEE GDEFGVFELG ANHRGEIDYT SSLVKPDVAL VNNVASAHLE GFGSLAGVAA AKSEIFNHLS PDGTAVINAD DSFARVMKEA ASEHKQLTFA IEAAADLQGS GLEPDLLGRY CFKMSYLNQE VSVTLPLSGR HQVSNALAAA GICLTLGLPL SEIVSGLSLL EPVKGRMLPT QLGRVRVIDD SYNANPASVS AAIDWLQEID GYRCLVLGDL GELGDNASLL HTELGELAKI RGIEALFSLG ELSANASTAF GGVHHQELEQ VVNNLVNHIN QLQGDVTVLV KGSRSAKMER VVEALIVAYG RGEFV
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