| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0405 |
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| Symbol | murE |
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| ID | 5612354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 472911 |
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| End bp | 474392 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931237 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
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| Protein accession | YP_001472146 |
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| Protein GI | 157373546 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
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| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000987576 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTATTAC GTGATTTGTT AGCCCCTTGG TTCCATTATG CGGGTTCGGA AAGCTTCAAT
AAGCTGACTT TAGATAGTAG GGCTGTGGGC CCGGGGGATC TCTTTATTGC CATCCCCGGT
CATCAAGCCG ATGGCCGAAA GTATATTCGT TCTGCCGTAC AACAAGGTGC TGTGGCATCA
CTGGTTCACA CCGATGACCC TGAGAGTCAT GGAAAATGTG TCGATGATGA AGGAAAACAG
ATCTTATTCT TCCAGCTTAA TCGCCAACTG TCAGCTTTAG CGGCTCAAGC ATATCCACTT
AGCGCAGAAC GTTTGAAGTT GGTCGGTGTA ACAGGCACTA ATGGTAAAAC ATCGATAACC
CAACTTATGG CCCAGCTGGT TACCTTATTG GGAAAACAGA GTGCGGTGAT GGGCACCCTG
GGCAATGGCC TTTGGGGTGA CTTAGTCGAT AGCGGTAATA CGACAGCCGA TGCAATCACC
ATGATGGCTC AGCTTCAGGA GTTTGATGCC CAAGGCGCCG AGTTATGCGC GATGGAAGTC
TCGAGTCATG GTTTGATTCA GGGAAGAGTC GAGGCCGTTC CCTTCGATGT GGCGGTATTT
ACGAACTTAA GCCGCGATCA TCTGGATTAT CATGGGACCA TGCAGGCTTA TGGCGATGCG
AAGAAACGAT TATTTAACTT TCCCTCGTTA AGCTCTGGCT TGATCAATCT TGATGATGAG
ATTGGTAAGC AATGGCTAGC CGAACACGAT ACGGGGAAAT ATACCAGTTT CAGTATTCAT
GGTGAGCCGG CTTCGATTGA AAACTCAAAA GCCATCTACA CCCAAAATAA CCATTTCCAT
CATCAGGGGG TCGATGCAAA ATTAGTCTGG CCTGGTGGCC ATGCCGATCT GTGTTCACCA
TTATTAGGCT CATTTAACCT GTCTAACCTC ATTGCCGCGC TGGGCGCCTT GTATTTGCTT
GGCTTCGATA TGCATTCATT AGTTGCCGTG GTGCCTAAGT TACAAGCCGT TGCCGGACGC
ATGGAGCGAT TTACCACCCC AGATGATGTC ACTATTGTCG TCGATTATGC ACACACTCCC
GATGCCATCG AGCAGGCCCT TAAGGCATTA AGAGGTCATT GTGACGGTGA GCTGTGGTGT
CTGTTTGGTT GTGGTGGCGA TCGTGATAAA GGCAAGCGAC CATTGATGGC GCAAGCCGCA
GAAAAATATG CGGATAGAGT GGTGGTGACT AGTGACAATG CCAGAAGCGA GCAACCCGAT
GTCATCATTA ACGATATTCT GGAAGGATTA ACCGCACCCG ATAAGGCGTT AACACAAGTG
GATCGAGAAG TGGCTATTCG TCAAGTGGTG GCAAATGCCA AGGCGGGAGA CTTAGTGTTA
TTAGCCGGGA AAGGGCATGA AACCTATCAG GAAATAGCTG GAGTTCGCCG GCAATATGAT
GAGCGTGCGC TGGCACGTGA ACTTTCCGAG GCTCAAGTAT GA
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| Protein sequence | MLLRDLLAPW FHYAGSESFN KLTLDSRAVG PGDLFIAIPG HQADGRKYIR SAVQQGAVAS
LVHTDDPESH GKCVDDEGKQ ILFFQLNRQL SALAAQAYPL SAERLKLVGV TGTNGKTSIT
QLMAQLVTLL GKQSAVMGTL GNGLWGDLVD SGNTTADAIT MMAQLQEFDA QGAELCAMEV
SSHGLIQGRV EAVPFDVAVF TNLSRDHLDY HGTMQAYGDA KKRLFNFPSL SSGLINLDDE
IGKQWLAEHD TGKYTSFSIH GEPASIENSK AIYTQNNHFH HQGVDAKLVW PGGHADLCSP
LLGSFNLSNL IAALGALYLL GFDMHSLVAV VPKLQAVAGR MERFTTPDDV TIVVDYAHTP
DAIEQALKAL RGHCDGELWC LFGCGGDRDK GKRPLMAQAA EKYADRVVVT SDNARSEQPD
VIINDILEGL TAPDKALTQV DREVAIRQVV ANAKAGDLVL LAGKGHETYQ EIAGVRRQYD
ERALARELSE AQV
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