Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0404 |
Symbol | |
ID | 5612164 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 471175 |
End bp | 472911 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640931236 |
Product | peptidoglycan glycosyltransferase |
Protein accession | YP_001472145 |
Protein GI | 157373545 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000306404 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCAAAC AGGCAAAGCG TAAACAGAAG CCGCAGTTAA TCGAATGGCG TTTATATGTC GTTGTTGCCT TCGTATGCCT GCTGTTTACC AGTCTTATCG GTCGTGCTGC TTATATTCAA ATCATAGAGC CTGAAAAGCT ACGCCATGAA AGTGATATGC GTACGCTTCG TACCACCAGT AGAGAGGTAC AGCGTGGACT GATCACCGAT CGTAACGGTG AGATGTTAGC CGTGAGTGTG CCGGTAAAGG CGGTATATGC CGATCCTAAG GTCGTCCACG ACCGCAATGG TTTTGTCGAT ATGCGGCGCT GGCAAGCGTT GGCCGATATT CTTCATGAGC CTAAAGAGAA GATACTGAAG CGGGTTCAAT CAAATCCAAA GAAACGTTTT ACCTATCTTA AACGTCAGGT CACACCGGCT GTTGCGGAAT ATATCAGTAA GTTAAAGCTA CCGGGTGTGT ATCTAAAATC AGAATCCCGC CGCTACTATC CGACCAGTGA AATCTCGGCT CAGTTAGTGG GGATCACTAA CATCGATGAT ATTGGCATAG AAGGTATCGA GAATTCCTAT AATGATTGGT TAACCGGTAC CCCATCGAAA CAGAAAGTAC GTAAATCGAG GGATGGTCAT GTCGTCGAGC GCCTGGATAT CGTGCAGGAT GGAGACAGTC CAAACGACCT GGTGCTTAGC CTGGATCAGC GCATTCAGCA GTTGGCATAC CGTGAGCTGA AAAAAGCGAC GGAGATAAAT CAAGCGACCT CGGCTTCTAT CGTTGTTCTC GATGTACACA CAGGGGAAGT GTTGGCTATG GCCAATACAC CATCTTATAA CCCTAACTCT CGAGATAATC TTCAGGCGTT CAGAATGCGA AATCGGGCGC TTACCGATTC CTATGAGCCT GGCTCGACCA TTAAGCCATT TGTTGTCGCT GCGGCACTGG AAGCCGGAAC GATTAAATCA GATCAGGTCA TTAAGACCTA TCCTGGTCGA ATGAGGATTG GTGGCAAGGT TGTACGGGAC TCCAGGTATT ATGGCGACCT TTCTCTTGCG GATGTGTTGG TGCATTCGAG TAACGTGGGC ATGGCAAAAA TTTCGCTTTC CATGCCTGTC CAGGAGCTAT TGGGCGCTTA TCAGACAATG GGACTGGGTA ATTACTCCGG GATCAATCTT GCGGGTGAGA GTGCCGGACT TATCCATGAC CGCAGGCGTT GGTCTGAATT TGAACGTGCG ACGCTTTCAT TTGGTTATGG GCTTATGGTA ACACCGCTTC AATTAGCCAG GTTGTATGCC ACCTTAGGGA GTAAAGGTGT CTTATATCCC GTCTCTATCT TAAAGCTAAA GCAGCAACCC GAGGGGGAGC AGGTCATTTC ACCGGAGATT GCACAGAGCG TGATGGAGAT GCTCATCGGT GTCACAGAAA AAGGTGGCAC GGCGACCAAA GCCCATATTG AGGGCTATCC GGTCGCAGGA AAAACAGGTA CGGCCCGTAA AGCGGTTGCC GGCGGTTACG GTGAGGATTA TGTTGCCATT TTTGCGGGTG TTGCCCCTGT ACATAATCCT GAATTGGCGA TTGTTGTCGT AGTGAATGAG CCCAAAGGTG ACAGGTATTA CGGTGGTGAT GTTGCCGCTC CTGTGTTCGC CTCAGTTATG TCAGGTGCTT TACAGATGCT TAATATTGAA CCTATTTCAT CGAGAGAAAA GGTACGTCTA GCGGGTACAA CGAGGAGAAC TGAGTGA
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Protein sequence | MSKQAKRKQK PQLIEWRLYV VVAFVCLLFT SLIGRAAYIQ IIEPEKLRHE SDMRTLRTTS REVQRGLITD RNGEMLAVSV PVKAVYADPK VVHDRNGFVD MRRWQALADI LHEPKEKILK RVQSNPKKRF TYLKRQVTPA VAEYISKLKL PGVYLKSESR RYYPTSEISA QLVGITNIDD IGIEGIENSY NDWLTGTPSK QKVRKSRDGH VVERLDIVQD GDSPNDLVLS LDQRIQQLAY RELKKATEIN QATSASIVVL DVHTGEVLAM ANTPSYNPNS RDNLQAFRMR NRALTDSYEP GSTIKPFVVA AALEAGTIKS DQVIKTYPGR MRIGGKVVRD SRYYGDLSLA DVLVHSSNVG MAKISLSMPV QELLGAYQTM GLGNYSGINL AGESAGLIHD RRRWSEFERA TLSFGYGLMV TPLQLARLYA TLGSKGVLYP VSILKLKQQP EGEQVISPEI AQSVMEMLIG VTEKGGTATK AHIEGYPVAG KTGTARKAVA GGYGEDYVAI FAGVAPVHNP ELAIVVVVNE PKGDRYYGGD VAAPVFASVM SGALQMLNIE PISSREKVRL AGTTRRTE
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