Gene Ssed_0404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0404 
Symbol 
ID5612164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp471175 
End bp472911 
Gene Length1737 bp 
Protein Length578 aa 
Translation table11 
GC content49% 
IMG OID640931236 
Productpeptidoglycan glycosyltransferase 
Protein accessionYP_001472145 
Protein GI157373545 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0768] Cell division protein FtsI/penicillin-binding protein 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000306404 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCAAAC AGGCAAAGCG TAAACAGAAG CCGCAGTTAA TCGAATGGCG TTTATATGTC 
GTTGTTGCCT TCGTATGCCT GCTGTTTACC AGTCTTATCG GTCGTGCTGC TTATATTCAA
ATCATAGAGC CTGAAAAGCT ACGCCATGAA AGTGATATGC GTACGCTTCG TACCACCAGT
AGAGAGGTAC AGCGTGGACT GATCACCGAT CGTAACGGTG AGATGTTAGC CGTGAGTGTG
CCGGTAAAGG CGGTATATGC CGATCCTAAG GTCGTCCACG ACCGCAATGG TTTTGTCGAT
ATGCGGCGCT GGCAAGCGTT GGCCGATATT CTTCATGAGC CTAAAGAGAA GATACTGAAG
CGGGTTCAAT CAAATCCAAA GAAACGTTTT ACCTATCTTA AACGTCAGGT CACACCGGCT
GTTGCGGAAT ATATCAGTAA GTTAAAGCTA CCGGGTGTGT ATCTAAAATC AGAATCCCGC
CGCTACTATC CGACCAGTGA AATCTCGGCT CAGTTAGTGG GGATCACTAA CATCGATGAT
ATTGGCATAG AAGGTATCGA GAATTCCTAT AATGATTGGT TAACCGGTAC CCCATCGAAA
CAGAAAGTAC GTAAATCGAG GGATGGTCAT GTCGTCGAGC GCCTGGATAT CGTGCAGGAT
GGAGACAGTC CAAACGACCT GGTGCTTAGC CTGGATCAGC GCATTCAGCA GTTGGCATAC
CGTGAGCTGA AAAAAGCGAC GGAGATAAAT CAAGCGACCT CGGCTTCTAT CGTTGTTCTC
GATGTACACA CAGGGGAAGT GTTGGCTATG GCCAATACAC CATCTTATAA CCCTAACTCT
CGAGATAATC TTCAGGCGTT CAGAATGCGA AATCGGGCGC TTACCGATTC CTATGAGCCT
GGCTCGACCA TTAAGCCATT TGTTGTCGCT GCGGCACTGG AAGCCGGAAC GATTAAATCA
GATCAGGTCA TTAAGACCTA TCCTGGTCGA ATGAGGATTG GTGGCAAGGT TGTACGGGAC
TCCAGGTATT ATGGCGACCT TTCTCTTGCG GATGTGTTGG TGCATTCGAG TAACGTGGGC
ATGGCAAAAA TTTCGCTTTC CATGCCTGTC CAGGAGCTAT TGGGCGCTTA TCAGACAATG
GGACTGGGTA ATTACTCCGG GATCAATCTT GCGGGTGAGA GTGCCGGACT TATCCATGAC
CGCAGGCGTT GGTCTGAATT TGAACGTGCG ACGCTTTCAT TTGGTTATGG GCTTATGGTA
ACACCGCTTC AATTAGCCAG GTTGTATGCC ACCTTAGGGA GTAAAGGTGT CTTATATCCC
GTCTCTATCT TAAAGCTAAA GCAGCAACCC GAGGGGGAGC AGGTCATTTC ACCGGAGATT
GCACAGAGCG TGATGGAGAT GCTCATCGGT GTCACAGAAA AAGGTGGCAC GGCGACCAAA
GCCCATATTG AGGGCTATCC GGTCGCAGGA AAAACAGGTA CGGCCCGTAA AGCGGTTGCC
GGCGGTTACG GTGAGGATTA TGTTGCCATT TTTGCGGGTG TTGCCCCTGT ACATAATCCT
GAATTGGCGA TTGTTGTCGT AGTGAATGAG CCCAAAGGTG ACAGGTATTA CGGTGGTGAT
GTTGCCGCTC CTGTGTTCGC CTCAGTTATG TCAGGTGCTT TACAGATGCT TAATATTGAA
CCTATTTCAT CGAGAGAAAA GGTACGTCTA GCGGGTACAA CGAGGAGAAC TGAGTGA
 
Protein sequence
MSKQAKRKQK PQLIEWRLYV VVAFVCLLFT SLIGRAAYIQ IIEPEKLRHE SDMRTLRTTS 
REVQRGLITD RNGEMLAVSV PVKAVYADPK VVHDRNGFVD MRRWQALADI LHEPKEKILK
RVQSNPKKRF TYLKRQVTPA VAEYISKLKL PGVYLKSESR RYYPTSEISA QLVGITNIDD
IGIEGIENSY NDWLTGTPSK QKVRKSRDGH VVERLDIVQD GDSPNDLVLS LDQRIQQLAY
RELKKATEIN QATSASIVVL DVHTGEVLAM ANTPSYNPNS RDNLQAFRMR NRALTDSYEP
GSTIKPFVVA AALEAGTIKS DQVIKTYPGR MRIGGKVVRD SRYYGDLSLA DVLVHSSNVG
MAKISLSMPV QELLGAYQTM GLGNYSGINL AGESAGLIHD RRRWSEFERA TLSFGYGLMV
TPLQLARLYA TLGSKGVLYP VSILKLKQQP EGEQVISPEI AQSVMEMLIG VTEKGGTATK
AHIEGYPVAG KTGTARKAVA GGYGEDYVAI FAGVAPVHNP ELAIVVVVNE PKGDRYYGGD
VAAPVFASVM SGALQMLNIE PISSREKVRL AGTTRRTE