| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0397 |
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| Symbol | |
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| ID | 5612392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 464841 |
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| End bp | 466178 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931229 |
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| Product | long-chain fatty acid transport protein |
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| Protein accession | YP_001472138 |
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| Protein GI | 157373538 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2067] Long-chain fatty acid transport protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000252847 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTTTGA AAATGAGAGA GACAATGAAC AAGCGCATTT TATCTATGGC CGTGGCTGCG
GCGATTGTTG GATCGGTTAC ACAAGTTCAG GCTGCCGGGT TTCAGTTAGC AGAATACTCA
GCAACCGGGC TTGGCCGTGC ATTCGCCGGT GAAGCTGCCA TGGCTGATAA TGCCGCGGCG
CAATTTCGCA ATCCAGCCAT GATGACTTAC CTGTCAGGTA CGCAAGTTGC TGGTGGCGCT
ATTTTGGTTA TGCCAAATAT CGATATCAAC GGTGAAGTGA CCTTTGTTGA TGGTACAAAT
CCAACCTCTG CAAACGATAT TGCTGATGAT GCCGTTGTAC CAAATTTCTA TGTGACTCAT
CAGCTCAATG AACAGTGGTT TTTAGGTCTG GCCTTGGGCA GTAACTTTGG TATGGCGACT
GAGTTGGATG ACAGCTTCCG TGGTACTCAG TTTGGTAATG AAGCTTCTGT TACTACCATA
GAGATCAATC CAAATATCGC ATATCGCATC AATGAGCAGT TCAGTGTCGG TGCAGGTGTT
CGTTTCGTTA TTGGTGAAGG TAGCATAGGG GCAAAGAGTT CGGCCGATTC TGTTTTACCG
ACGCCTATGG GAAACCTGCC GGTACCTAAA GGGACCACGC TGAAATACAT GGAAGGCGAT
GATACGTCTT GGGGCTGGCA ATTAGGTGCC GCCTGGCAGA TTAACGATAG TAACCGTATT
GGGGTGAACT ACCGCTCTGC CGTCGATCAA AATCTGGAAG GTGAGGCCAA CGGTTTAGCC
TTCAACCCAA TGGATCCAAC ATTGAAGATG GATGGCGCCA TGGAGTTATC TCTGCCAGCG
ACCGCAGAGC TTGCTTCTTT CCATCAGCTG ACTGAGAAGT TGGCTATTCA TGCCAGCATC
AACTGGACCG ATTGGAGCTC ATTTGAAAAG TTGGAAGCCG TTATTCCTGC CCTATCTGAG
CCTACTCAGC TAGTGAAGCA GGAAAACTGG AAAGACAGCT ATCGCTTCGC TTTAGGTACC
ACTTATGATT TGAGCCAAAA ATCGACCCTA CGCGCGGGTG TGGCTTATGA TAGATCTGCG
GTCTCTGACG CCAACCGTAC CCTGACTATT CCAGAGATGG ATCGTCTGTG GCTGAGTGCC
GGTTATGGTT ATCACTATAG CGATAATCTC GACCTGGACT TCGGTGTGAC ATACATCTTT
GCCGATGAGT CACCTGTGGT TGAGCCTCGC CCTGGGATTG AGTCTGATCG TTCTTCTGCA
CTATTTGGCG GCACATTCAG TGGTACTACT AGTGGCAATA TTATGCTGGT GGGCGTACAG
GCAAGCTACC GCTTCTAA
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| Protein sequence | MTLKMRETMN KRILSMAVAA AIVGSVTQVQ AAGFQLAEYS ATGLGRAFAG EAAMADNAAA
QFRNPAMMTY LSGTQVAGGA ILVMPNIDIN GEVTFVDGTN PTSANDIADD AVVPNFYVTH
QLNEQWFLGL ALGSNFGMAT ELDDSFRGTQ FGNEASVTTI EINPNIAYRI NEQFSVGAGV
RFVIGEGSIG AKSSADSVLP TPMGNLPVPK GTTLKYMEGD DTSWGWQLGA AWQINDSNRI
GVNYRSAVDQ NLEGEANGLA FNPMDPTLKM DGAMELSLPA TAELASFHQL TEKLAIHASI
NWTDWSSFEK LEAVIPALSE PTQLVKQENW KDSYRFALGT TYDLSQKSTL RAGVAYDRSA
VSDANRTLTI PEMDRLWLSA GYGYHYSDNL DLDFGVTYIF ADESPVVEPR PGIESDRSSA
LFGGTFSGTT SGNIMLVGVQ ASYRF
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