| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0396 |
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| Symbol | leuD |
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| ID | 5612671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 463746 |
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| End bp | 464351 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931228 |
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| Product | isopropylmalate isomerase small subunit |
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| Protein accession | YP_001472137 |
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| Protein GI | 157373537 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0066] 3-isopropylmalate dehydratase small subunit |
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| TIGRFAM ID | [TIGR00171] 3-isopropylmalate dehydratase, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000184497 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAATCCAT TTACTTCACA CACTGGACTT GCAGTGATGA TCGATAGTGC TAACGTCGAT
ACCGATCAAA TTATTCCTAA GCAGTTTTTA TCTAAGGTGA CCCGGGATGG CTTTGGGGTT
CACCTGTTTC ATGATTGGCG TTATCTCGAT GAGGCAGGCG ATGAGCCAAA CCCCGGTTTC
AGCCTCAACC TGCCAAGATA CAAGGGCGCC TCTATCCTTA TCTCTAAAGA GAACTTTGGT
TGTGGTTCGA GTCGTGAGCA TGCTCCCTGG GCATTAGCCG ATTTTGGATT GCGAGCCATC
ATAGCACCGA GTTTTGCCGA TATTTTTTAT GGTAACTCGA TCAATAATGG CCTGCTTCCG
GTTCGTCTGA CCGATGTTGA AGTCCAGCAG TTGATGGATG AAGTTGAGGC CAGTGAAGGC
GCAGAGATCA CGGTAGACCT TGAGGAACTC ACGGTTACCT CTCCATCGGG TGCGGTATTT
AACTTTGAGA TAGCCGGTTC GGCAAGGCAT AACCTACTTA ATGGCCTGGA TGCTATCGGT
TTGAGTTTGG CTTGTGCGGA TCAGATAGCC CGCTATGAGG CACAATTGCC GACTTGGAAA
GCATAA
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| Protein sequence | MNPFTSHTGL AVMIDSANVD TDQIIPKQFL SKVTRDGFGV HLFHDWRYLD EAGDEPNPGF
SLNLPRYKGA SILISKENFG CGSSREHAPW ALADFGLRAI IAPSFADIFY GNSINNGLLP
VRLTDVEVQQ LMDEVEASEG AEITVDLEEL TVTSPSGAVF NFEIAGSARH NLLNGLDAIG
LSLACADQIA RYEAQLPTWK A
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