| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0394 |
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| Symbol | |
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| ID | 5612669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 461233 |
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| End bp | 462327 |
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| Gene Length | 1095 bp |
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| Protein Length | 364 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931226 |
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| Product | 3-isopropylmalate dehydrogenase |
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| Protein accession | YP_001472135 |
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| Protein GI | 157373535 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000221943 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTTATC AAATAGCGGT ATTAGCCGGA GATGGAATTG GATCTGAAGT GATGGCCGAG
GCGCGTAAAG TGCTGAGTGC TGTAGAGGAG CGGTTCGAGC TCGCTATTGA ATACAGTGAA
TATGATATCG GTGGCGCAGC TATCGATAAT CATGGTTGTC CATTACCGGA AGTCACTCTA
AAAGGCTGTG AAGCGGCCGA CGCCATTTTA TTTGGTTCGG TCGGAGGTCC TAAATGGGAG
CACTTGCCAC CCAATGATCA ACCTGAGCGT GGTGCATTAC TTCCTCTTCG CGGTCATTTT
GAGTTGTTCT GTAATATGCG CCCGGCAAAA CTACATGCAG GTTTAGAGCA TATGTCGCCG
CTACGCAGCG ATATCTCAGG CAAAGGTTTC GACGTGCTTT GCGTTCGCGA ACTAACCGGC
GGTATCTACT TTGGTAAGCC CAAAGGGCGT CAGGGTGAGG GAGAAGAGGA AGAAGCATTC
GATACCATGC GCTATAGCCG CAAAGAGATT AGACGTATCG CCAAGATAGC CTTCGAAGCG
GCGCAGGGTC GTCGTAAGAA GGTGACTTCT GTCGATAAAG CCAATGTGCT GGCATGTTCG
GTGTTGTGGC GAGAAGTGGT CGAAGAGGTC GCTAAAGACT ATCCCGATGT CGAACTTGAA
CATATCTATA TCGATAACGC CACCATGCAA CTGCTTCGCC GCCCTGATGA ATTCGATGTC
ATGCTTTGCT CTAACCTGTT TGGTGACATT ATCTCAGATG AGATCGCCAT GTTAACGGGC
TCTATGGGGC TACTTTCATC TGTGAGTATG AACAGTAAAG GTTTTGGTTT GTATGAACCT
GCCGGCGGCA GCGCTCCCGA TATCGCCGGG CAAGGCATTG CAAACCCCGT TGCTCAGATC
CTATCTGCCG CATTACTGCT TCGTCATAGC CTGAAGCTGG AGAGTGCGGC GGTGGCGATT
GAAGCGGCCG TAGGTAAAGC CCTTAGTGAT GGTTACCTAA CCGGAGAGCT ACTGCCTGCA
TCGCAGCGGG CCAATGCTAA ATCAACCTCT GAGATGGGTG ATTACATAAC TAAGCTGGTA
AAGGAAGGAA TCTAA
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| Protein sequence | MSYQIAVLAG DGIGSEVMAE ARKVLSAVEE RFELAIEYSE YDIGGAAIDN HGCPLPEVTL
KGCEAADAIL FGSVGGPKWE HLPPNDQPER GALLPLRGHF ELFCNMRPAK LHAGLEHMSP
LRSDISGKGF DVLCVRELTG GIYFGKPKGR QGEGEEEEAF DTMRYSRKEI RRIAKIAFEA
AQGRRKKVTS VDKANVLACS VLWREVVEEV AKDYPDVELE HIYIDNATMQ LLRRPDEFDV
MLCSNLFGDI ISDEIAMLTG SMGLLSSVSM NSKGFGLYEP AGGSAPDIAG QGIANPVAQI
LSAALLLRHS LKLESAAVAI EAAVGKALSD GYLTGELLPA SQRANAKSTS EMGDYITKLV
KEGI
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