Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0389 |
Symbol | |
ID | 5612750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 453603 |
End bp | 454499 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931221 |
Product | rarD protein |
Protein accession | YP_001472130 |
Protein GI | 157373530 |
COG category | [R] General function prediction only |
COG ID | [COG2962] Predicted permeases |
TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00000602328 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTTGACT CTGAACACCG CAAAGGCATT GCATTCGCGC TTTGTGCCTA TACTTTGTGG GGCTTTGCTG CCCTCTATTT TAAATTACTC GATCACGTTT CAGCGACTGA AATTTTGATC CATCGTGTGA TCTGGTCATT TGTTTTTGTG ACCATGCTCA TGTTCATTTT TGGTGGGTTC TCCAGGCTGA GACAAGTATT GAAACGCCCT AAACAGCTGG CGGTACTCAC ACTGACATCC GTCCTGATCG CAGGAAATTG GCTGCTATTT ATCTGGGCAG TGAATAATGA CCACATGCTG GATGCCAGTC TGGGATATTT CATCAACCCT CTGGTTAATG TCATGCTAGG TATGGTTTTT CTTAGCGAAC GGCTAAGGAA GCTACAATGG TGTGCCGTAG CCTTAGCCGG GGCCGGTGTG CTGGTTCAGT TGATCTCGTT CGGCTCGATT CCCCTGGTCT CACTGGGCCT GGCTTTCTCT TTCGGTTTAT ACGGGTTACT GCGAAAGAAG GTCAATGTCG ATGCCAAGAC AGGACTATTA GTCGAAACCG CGATTCTCTT TCCTATCGCT ATGATCTATC TGTTCGCCAA TATGGGGGAC GCACTCACTA ATCTGATGAC CAATACCCTA TCTAACAACC TACTCTTGAT GGCAGCGGGT ATAGTCACAA CCATACCGCT ACTCTGTTTC GCCGCCGCAG CGGTTAGAAT TCCGCTCTCC ATGCTGGGAT TCTTTCAATA TATCGGCCCC AGCATCATGT TTATACTCGC AGTTACGCTC TACAAAGAAC CCTTTGATCT GGAGAAGGGG ATCACCTTTG CTTTCATCTG GAGCGCATTG ATCCTGTTTA GTATCGATAT GCTCTATAAG CGTAAAAAGC CTCTGAGAGA GTCCTGA
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Protein sequence | MLDSEHRKGI AFALCAYTLW GFAALYFKLL DHVSATEILI HRVIWSFVFV TMLMFIFGGF SRLRQVLKRP KQLAVLTLTS VLIAGNWLLF IWAVNNDHML DASLGYFINP LVNVMLGMVF LSERLRKLQW CAVALAGAGV LVQLISFGSI PLVSLGLAFS FGLYGLLRKK VNVDAKTGLL VETAILFPIA MIYLFANMGD ALTNLMTNTL SNNLLLMAAG IVTTIPLLCF AAAAVRIPLS MLGFFQYIGP SIMFILAVTL YKEPFDLEKG ITFAFIWSAL ILFSIDMLYK RKKPLRES
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