| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0378 |
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| Symbol | rph |
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| ID | 5613263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 442841 |
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| End bp | 443554 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931210 |
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| Product | ribonuclease PH |
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| Protein accession | YP_001472119 |
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| Protein GI | 157373519 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0689] RNase PH |
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| TIGRFAM ID | [TIGR01966] ribonuclease PH |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000579905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCGCCCTA GCGACAGAAC CCCAGCTCAA TCACGTCCAG TGACAATTAC TCGTCAGTTT
ACAGCTCATG CTGAAGGCTC TGTTTTAGTT GAGTTCGGTG ACACTAAAGT ACTTTGTACT
GCCAGCTTCG AAGAGGGAGT TCCACGTTTT CTTAAGGGAA AAGGTCAAGG TTGGGTTACT
GCTGAGTACG GCATGCTGCC GCGTTCGACT CACAGCCGTA TGAACCGTGA AGCTGCTCGT
GGCAAGCAAT CTGGTCGTAC TCAGGAGATC CAGCGTCTTA TCGGTCGCTC ACTACGTGCA
GCCGTTGACA TGAAGGCTCT GGGTGAAAAC ACCATCGTTA TCGATTGTGA TGTAATTCAG
GCCGATGGTG GCACGCGTAC CGCTGCTATC ACTGGCGCAT GTGTTGCCTT GGTTGATTCG
CTTAACTGGG CTCGTGGAAA GGGCATTCTG AAAACAAACC CACTTAAGTT CCTTATCGCC
GCAGTCAGTG TTGGTATCTA CAAGGGCGAG CCAATTTGCG ATCTGGAGTA TATCGAAGAC
AGCGAAGCTG AGACCGATAT GAATGTTGTG ATGACAGAAA CCGGCAAGAT GATCGAGATC
CAGGGTACTG CTGAAGGCGA ACCATTTAGC CATGAAGAGC TACTGAGTTT ACTGGAGTTG
GCTAAGCACG GTATTCGTGA AATTGTCGAT ATACAGAAAG CGGCATTGAG CTGA
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| Protein sequence | MRPSDRTPAQ SRPVTITRQF TAHAEGSVLV EFGDTKVLCT ASFEEGVPRF LKGKGQGWVT
AEYGMLPRST HSRMNREAAR GKQSGRTQEI QRLIGRSLRA AVDMKALGEN TIVIDCDVIQ
ADGGTRTAAI TGACVALVDS LNWARGKGIL KTNPLKFLIA AVSVGIYKGE PICDLEYIED
SEAETDMNVV MTETGKMIEI QGTAEGEPFS HEELLSLLEL AKHGIREIVD IQKAALS
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