| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0375 |
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| Symbol | |
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| ID | 5613035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 439843 |
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| End bp | 441147 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931207 |
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| Product | HipA domain-containing protein |
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| Protein accession | YP_001472116 |
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| Protein GI | 157373516 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
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| TIGRFAM ID | [TIGR03071] HipA N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000772638 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAGTGGTT CTAACTTTCA CATCCTAGAG ATGCACTTTA GAGGCATGGT TATTGGGGCG
ATAGGTTTTG ACATAGACAC TGAACAGTTC TCTATCGAAT ACACTAAACC TTGGCAGGAA
AAGGGCTTTC CAATTTCACC AAGGCTCCCA CTTGATGGCC AAGCCAGCAG TTCTCAAATT
TCCATTTACC TGACTAACCT ACTGCCCGAA AATAAAGGGC TTGATCACCT CATTGAAGCC
CTAGGCATTG CCAAAAGTAA TACATTTGGT CTGATCAAGG GCATTGGGTT TGATACCTCT
GGTGCAATAT TGTATCTGCC TGTGGGCACC AAACCACCAG CAACCTCTTT TACTCCGATT
TGCAAAGAAG ACCTCATCAA ACGAATCGAA GATCCTGAAC ATTGGCCGAT GGAAGTCTGG
GACGGAAAAC CACGCCTTTC AGTTGCTGGA GTTCAATCAA AATTAAACCT ATTCCACAGC
GACAAAGAAT ACGGATTTGG TGAAGGTGAA CTCTGCTCAA CCCACATCAT TAAATTTGAA
AAAAACAATC AGCACCTCGT ACTTAACGAA TTTATTACCA TGACACTTGC CGGCCTCATC
GGCATGCAGG TTGCGAAAGT TGATATAATG CCAATAGGGA AATACAAAGC ATTATCCGTT
ACCCGCTTCG ATCGCATGTA CGAACCTGAG CGCCATATTG TAATGCGTCG TCACCAGATC
GATGTATGTC AGGCTCTGGG ATTTTCCGTC TCAAGAAAGT ATGAACGAAA TTTTGGTAGT
GGACGTGACG TTCAAGATAT TCGTGAAGGA GTGAGTCTAG AAAGGCTGTT TAGCATCGCT
GAGCACTGTG CTAATCCAGC ACAAGCCAAG TTTGACATGC TTCGTTGGAC AATCTTTAAC
TTACTCGTCT GCAATGCGGA CTCACATGGC AAAAACTATT CATTCTATGT AACTCCTGAT
GGGCTTGAAC CGACCCCATG GTATGATCTT GTCAACGTGC AGATGTACCC TGATTTTGAT
CAAGAGCTTG CTATGGCTAT TGGTGATGAG TTCGAAGCTG ACAAGATCCA CGCCTACCAA
TTGATGACAT TTGCTGAAGA ATGTGGAATT AAGCAAAACA TACTTGAATT ATCGCTCAAG
CAACTGGCGA AAGCGATTAT CGGCAATCTG GATAAAGCGG CAAAACAAAC CGGGGAGATT
ACGGATGCAG AATCCAAGTA TGTTGAGACG TACAAAAAAA CCATTCAAGC ACGATGTGAA
TACTACCTGG CTCAGGTTGA AGAAATGAAA CACATTAAGC TATAG
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| Protein sequence | MSGSNFHILE MHFRGMVIGA IGFDIDTEQF SIEYTKPWQE KGFPISPRLP LDGQASSSQI
SIYLTNLLPE NKGLDHLIEA LGIAKSNTFG LIKGIGFDTS GAILYLPVGT KPPATSFTPI
CKEDLIKRIE DPEHWPMEVW DGKPRLSVAG VQSKLNLFHS DKEYGFGEGE LCSTHIIKFE
KNNQHLVLNE FITMTLAGLI GMQVAKVDIM PIGKYKALSV TRFDRMYEPE RHIVMRRHQI
DVCQALGFSV SRKYERNFGS GRDVQDIREG VSLERLFSIA EHCANPAQAK FDMLRWTIFN
LLVCNADSHG KNYSFYVTPD GLEPTPWYDL VNVQMYPDFD QELAMAIGDE FEADKIHAYQ
LMTFAEECGI KQNILELSLK QLAKAIIGNL DKAAKQTGEI TDAESKYVET YKKTIQARCE
YYLAQVEEMK HIKL
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