| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0362 |
|---|
| Symbol | |
|---|
| ID | 5612051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 424401 |
|---|
| End bp | 425414 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640931194 |
|---|
| Product | integrase, catalytic region |
|---|
| Protein accession | YP_001472103 |
|---|
| Protein GI | 157373503 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.540687 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000859615 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTATTCAA ATCATAATGA GATCCGAAGT AAACTTGCGC TATTACAACT AGCCAAAGAG
CTTGGAAGTA TCAGTAAAGC CTGCGATATG ATGGGTTACA GCCGAGACAG TTATTACCGC
TTTAAGAAGC AGTATGAGAA TGCCGGCGAG CAAGGGCTAC ACAATCTATC GAGAAAGAAG
AGCACACTTA AGAATCGGGT CTCACAGGAA GTGGAAGATC AGGTCATAGA GATCGCACTC
GATTATCCGA ACTATGGCCA GGCCAAGGTG GCGGAACTCT TAACCGCGAG GGGATGTACC
ATATCCCCCA GCGGGGTTAG AACCATCTGG TTACGTCATA ATCTGGAGAC TAAGCAGAAT
CGCTTAATTG CCTTAAACAG TCGTCTTCGA CAGCAAAATG AGCTCGACTT TAACGCTCAG
CATCAGATAG AAAAATCGTG CAAACTTCAA CAGGAGGAGG GCAGCCTAGA CTGCCAGGGT
CCCGGTGATA TTTGCGTGCA GGACACCTTC AAAATTGGCA ATATTCCGGG ACTGGGCACT
GTCTATCAGC ACACCTGCAT GGATGCCTAT AGCCAATACA CGCATGCGCA TATAACGCTG
GAAAAGAGCT CAACAATATC CTCTGACTTT CTCCGCACGC AGGTACTTCC CTGGTATAAG
AACCAATATA TCCCTATCAA TAGCATTTTG ACCGATAGAG GCGCCGAATT CAGTGGAAAA
TATAGCCAGC AGTTTCAAAA TCTACTTCAA CAAACCGCTA TTAACCATAT TCAGAAAAGG
GCTTATAACG GGCCGATCGT TAATGGTATT GCCGCCCGAT TTCACAACCT TGCTCACAGC
GAGTTTTATG CGCCATTCTT AAAGAACAAT AAGGTATCAA ACATAGAGAC GTTAAATGAA
AATTTGCAAA AATGGCTTAA GCGCTACAAC CATCAGTACG CAATTGCCGG AAGGTATACC
TTAGGTAAAA CGGCCATCGA GGTGATCGAA CTCAGTCGAC ACTTGTATAG ATAA
|
|---|
| Protein sequence | MYSNHNEIRS KLALLQLAKE LGSISKACDM MGYSRDSYYR FKKQYENAGE QGLHNLSRKK
STLKNRVSQE VEDQVIEIAL DYPNYGQAKV AELLTARGCT ISPSGVRTIW LRHNLETKQN
RLIALNSRLR QQNELDFNAQ HQIEKSCKLQ QEEGSLDCQG PGDICVQDTF KIGNIPGLGT
VYQHTCMDAY SQYTHAHITL EKSSTISSDF LRTQVLPWYK NQYIPINSIL TDRGAEFSGK
YSQQFQNLLQ QTAINHIQKR AYNGPIVNGI AARFHNLAHS EFYAPFLKNN KVSNIETLNE
NLQKWLKRYN HQYAIAGRYT LGKTAIEVIE LSRHLYR
|
|---|
| |