| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0353 |
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| Symbol | |
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| ID | 5612889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 412077 |
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| End bp | 413807 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931185 |
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| Product | OPT family oligopeptide transporter |
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| Protein accession | YP_001472094 |
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| Protein GI | 157373494 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1297] Predicted membrane protein |
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| TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0737792 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAACAT CAAATAACAT TTCACAGCCC CTTTCTATCC GAGCGCTCCT TACAGGGATG
ACACTCGGAA GTCTGCTGGT ATTGTGCAAC CTCTATATGG CCCTTCGCAT TGGCTGGTCA
ATAAATATGT CTGTTCTGGC CTCCTTGCTT GGTTTTGTTA GCTGGAAAGC GGTGGAAACG
ACCATAGGTT GCAGAGCCTG GGACCCAAGT GAGACAAACA TTCAGCAAAC AGTAGCATCA
GCTGCCGGAG CAACGATATC GGCAGGGCTT GTAGCTCCCA TCCCCGCTTA CCTTATTCTC
ACCGATACTC AGTTTGAATA TTGGCCCATG GTGATCTGGA TGATAGCCAT CAGCCTTCTC
GGGATCTGCG TCGCTTCCGC CATTCGCCCG GCTATGCTCA ATAATGAACG CCTCAGATTT
CCTGCCGGTA TTGCAACGGC CGAAGTGATC ACCGATATGT TCAGTAGTGG GCGCATTGCA
CGTCACCGAA TCATTGCTCT GCTGTCTGCC ATGGCGATCA CCATCAGCCA TCGAATATTT
ATTCCGGTGA GCTATAAGAT TCCCTTAGGG TTTTCAATTC CTGGTCAAAA TGCCATGGCA
GGCACTAGCA TCAGCGCTAA AAATCTGGGG TTTATTATCG ACCCCTCATA CATGCTACTG
GCCTTCGGAG CCATCATAGG TACAAGGGCG GCTATCAGCC TCTCTATTGG CTGCTTAATT
GCCTGGCTTG GGCTAGGCCC CTATATTCTT GGCCAAGGCT GGGAACAGGC GGGCCCAGTA
GATGGTAACT GGTTCAGTTA CATCATAGAT TGGTTAGTCT GGCCTGGCGT CGCCATGATG
CTAGCCTCAG CTTTAACAAC CACGGCGATA ACCCTATTTA AGTCGGATAG AAAAAACCGT
CTCTCACTTA TGTGGGGCTT ACCCGAGTTT CTGCTTTTAG GCACGATCAC CCCGGTCATT
GTCTTTCTCC AGGTGTGGCT ATTTGATATC AGTTGGTTTG CCGCAATTTT AGCTGTACCA
CTCGCCTTCC TGTTTGCCAT CGTTGCCGCA CAAGTGGTCG GCGAGACGGG TATTCCACCA
GTCGGCGCGC TAGGAAAACT CTCTCAACTT TCCTTTTCGA TAATTAGCCC TGGCAGTGTT
ACGACCAACT TGATGACAGC CAATGTAGCA GGCGGTGCTG CGGGTCAGGC CACGGATCTG
CTCAATGATT TTAAAGCTGG GCATATATTG GGAACCAACC CCAGACATCA GATATTCGCG
CAGGCTATGG GGATCTTAGT AGGCTGCCTG ACCAGCGCCG GGATCTTCAT GTTACTTATT
CCAAATCCCG CCGAGCAACT GATGACAGAA CAGTGGCCGG CACCTGGCGT TGCCACATGG
AAGGTCATTG CTATCGCCCT GACCGACGGG TTAGAGGCAA TACCACAATC GGCAAGATAT
GCCATGTTTG TCGGCATTGT TGCTGCCACC ATTAATGAGC TTTTGCCGCT CATAGTGCAA
GAAAAGTGGC ACAGGTATCT ACCTAGCATG TCAGCAATGG GCCTGGCATT TGTACTGCCT
GCTCAAGTCA GCATGATGCT ATTTATCGGC GCAATATTAG CTTGGGGGTT GAGACGATTA
GCACCGCGCT GGTCGCAACG ATTCCTGCTG GCCATCGCCG CAGGTTGTAT TGCAGGAGAG
AGTCTTGCCG GGGTGCTTGG CTCTTTATGG CACCTGTTGC TATCTAAATA A
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| Protein sequence | MPTSNNISQP LSIRALLTGM TLGSLLVLCN LYMALRIGWS INMSVLASLL GFVSWKAVET
TIGCRAWDPS ETNIQQTVAS AAGATISAGL VAPIPAYLIL TDTQFEYWPM VIWMIAISLL
GICVASAIRP AMLNNERLRF PAGIATAEVI TDMFSSGRIA RHRIIALLSA MAITISHRIF
IPVSYKIPLG FSIPGQNAMA GTSISAKNLG FIIDPSYMLL AFGAIIGTRA AISLSIGCLI
AWLGLGPYIL GQGWEQAGPV DGNWFSYIID WLVWPGVAMM LASALTTTAI TLFKSDRKNR
LSLMWGLPEF LLLGTITPVI VFLQVWLFDI SWFAAILAVP LAFLFAIVAA QVVGETGIPP
VGALGKLSQL SFSIISPGSV TTNLMTANVA GGAAGQATDL LNDFKAGHIL GTNPRHQIFA
QAMGILVGCL TSAGIFMLLI PNPAEQLMTE QWPAPGVATW KVIAIALTDG LEAIPQSARY
AMFVGIVAAT INELLPLIVQ EKWHRYLPSM SAMGLAFVLP AQVSMMLFIG AILAWGLRRL
APRWSQRFLL AIAAGCIAGE SLAGVLGSLW HLLLSK
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