| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0352 |
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| Symbol | |
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| ID | 5612888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 410345 |
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| End bp | 411298 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931184 |
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| Product | cytochrome c family protein |
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| Protein accession | YP_001472093 |
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| Protein GI | 157373493 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.101331 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGAACA AATGTATTAT CACTAAGTTA CTTTGTGGGA TATTCGCTTT CGCGTGCTTA
TCTCTCTCAG TTCAGGCGGC CCCCTGGAAC CAACTCACTG GTGAACAACT GGAGCAGAAA
CTGGCGGAGA AATTTGCTCA GGGTAAATAT TCTAAGAAAG GTGCCGATTC CTGCCTGATG
TGTCATAAAA AAAATGACAA GGTCATGGCG ATATTCGGTG GAGTACATGG CAACACGAGC
CAACCGGATT CACCCATGGC GGGTCTGCAG TGCGAAGCCT GTCATGGACC GTTAGGTAAA
CACAATAAGG GCGGCAAGGA ACCGATGATC GCCTTTGGTA AAGAGAGCAA GCTGCCTGCT
CAGAGTCAGA ACAGTGTTTG CCTGGGATGC CATAACGATC CTAAGCAGAT GGCATGGCAT
AGCAGCAGCC ACAATTTAGA CGAGGTGGCC TGTAGCGATT GTCATAATAT CCACACCGAC
AAAGATCCGG TAATGGACCA ACTCACGGTC AATGACACCT GTACCTCTTG TCACACTCAG
CAAAAATCAG ACATGAATAA GCGCTCATCC CATCCGATGA AATGGGATCA AATGACCTGT
ATCGATTGCC ATAACCCACA TGGATCGATG AGTGAAAGTG CACTTAACCA CACCACAGTC
AATGACACCT GTTATAGCTG TCATGGCGAG AAACGTGGCC CAGTTTTATG GGAGCATGCA
CCGGTCACTG AAAATTGTGC CAACTGTCAT AACCCCCATG GCAGCGTGAA TGAAGCCATG
CTTACTCACA GGGCGCCGCA GCTGTGTCAG CAATGCCATA TGGATGATGG CCATGCAAGT
CGTGTCGTAC AGCAAGGTGG AAGTGACGCC TTTGGCGGCG GTAAGAGCTG TCTCAACTGC
CATAGCCAGA TCCATGGCTC CAACCACCCA GCCGGCAGCA AGCTGCAGCG CTAA
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| Protein sequence | MMNKCIITKL LCGIFAFACL SLSVQAAPWN QLTGEQLEQK LAEKFAQGKY SKKGADSCLM
CHKKNDKVMA IFGGVHGNTS QPDSPMAGLQ CEACHGPLGK HNKGGKEPMI AFGKESKLPA
QSQNSVCLGC HNDPKQMAWH SSSHNLDEVA CSDCHNIHTD KDPVMDQLTV NDTCTSCHTQ
QKSDMNKRSS HPMKWDQMTC IDCHNPHGSM SESALNHTTV NDTCYSCHGE KRGPVLWEHA
PVTENCANCH NPHGSVNEAM LTHRAPQLCQ QCHMDDGHAS RVVQQGGSDA FGGGKSCLNC
HSQIHGSNHP AGSKLQR
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