| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0331 |
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| Symbol | |
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| ID | 5610027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 383891 |
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| End bp | 385558 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931163 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_001472072 |
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| Protein GI | 157373472 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.167581 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATCGC TGATGGAATC GACAATTAAA ACCCCTGTAG AGATGCTAGC CCATTGGGTC
GACAAGCTCG GTAACAACAC CTACCTGAGA CAACCCATCA ATGGTCAATA TAAAGATTTT
AGCTGGGTAG AAGTTCAGCA GAAGATGCAA CAGATAGCCG GTGCACTGAG ACACTTAGGG
TTAAAGCCCG GTGATAAGGT CGCGGTATTA TCGAAAAACT GCGCCGAATG GTTTATTACC
GATCTCGCCC TGATGCATGG GGGGTACATT AGCGTTCCCA TCTATCCCAC GGCCAACGCA
GACACCATAC GTTATGTCCT CGAGCACAGT GAAGCGAAAG CCATCTTTAT CGGCAAGCTG
GATTATTGGG CCGATCAGGA AGCTGGCGTA GGTGGTGATA TCCTTAGAAT GGCAATGCCC
TACGACACTA TGCCGGCACA ATACCAGTGG GACAGCCTGC TCGAAATGGG CCAACCTCTA
ATCGATGCGC CCTTCGCGAC ACCGGATCAG ACCATGACCC TGATCTACAC CTCGGGGTCA
ACCGGCAAGC CCAAGGGTGC GATACTGAAC TTCGCCAGTT ATGGCTGGAC CTGTAAGGCT
GTGGTCCGGG ATCTGAAAAC GGACATTGAA GACAGGCTGA TCTCCTATCT GCCCCTGGCG
CATATTACCG AACGCGTTGC GATGGAGGGC TCCTCATTTT ATTCCGGCAG CAGCGTCGCA
TTTGTTGAGA GTCTCGATAG TTTTGTCACC GATGTTCAAC GCGCAAGACC CACGGTCTTC
TTCTCTGTCC CACGGCTGTG GAGCCTGTTT CAGCAAAACA TTATAGAGAA GATCGGCTAT
AAGAAGCTCA ATTTTCTGCT TAAGGTGCCG ATCCTCAATA ATATCGTTAA GAAGAAGATC
CATGAGGGTC TGGGGTTAGA GCACTGCCAC CTGCTAGGTT CTGGCTCGGC GCCTATTCCA
CCGTCTCTGA TCGCCTGGTA TCACAAGATA GGACTCAACA TCAGTGAAGC ATGGGGCATG
ACAGAGAACA GTGCCTACTC GATTATCAAC TACCCATTCG ATCCCGCTAA AATCGGCACA
GTCGGCCGCG CAATCGAGGG ATGCTCCATT AAACAAACTG AGTCCGGAGA ACTGTTGGTT
AAGAGTCCGG GATTGATGAC GGGTTACTAT AAACAACCTG AGATGACCGC AGCCTGTTTC
GATCCCGATG GTTACTTCCA TACCGGCGAT CTTTGTGAAA TCGACAACGA TGGCTGTGTC
ACCATTACCG GGCGGGTAAA AGATAACTTT AAAACGTCCA AAGGAAAGTA TGTCGCGCCG
GTACCTATTG AGCGCAAGCT TGCCCAGGAT CCTCATATAG AGCTGCTCTG TGTCATAGGT
TCGGGTCTGC CCCATCCTAT AGCCCTGGTA CAACTCTCCG AGGGCGCATC ACTGCAGCCA
AGAGAGGAGG TACGCACCTC CTTGAAGGCG ACGCTGGACA GCATCAACCC TAACCTGGAG
TCCCATGAGA CCTTAGATGC AATAATTGTC GTCTCTGAAC CATGGGACGT CGATAATGAC
GTATTAACTC CGACACTGAA GATAAAACGC CATGTGTTAG AAAAACGTTT CAGTGAAAGA
GTAGATGGGA TCCGTGGAGG CAAGGTTCGC TGGGAAGAGG AGCTGTAA
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| Protein sequence | MESLMESTIK TPVEMLAHWV DKLGNNTYLR QPINGQYKDF SWVEVQQKMQ QIAGALRHLG
LKPGDKVAVL SKNCAEWFIT DLALMHGGYI SVPIYPTANA DTIRYVLEHS EAKAIFIGKL
DYWADQEAGV GGDILRMAMP YDTMPAQYQW DSLLEMGQPL IDAPFATPDQ TMTLIYTSGS
TGKPKGAILN FASYGWTCKA VVRDLKTDIE DRLISYLPLA HITERVAMEG SSFYSGSSVA
FVESLDSFVT DVQRARPTVF FSVPRLWSLF QQNIIEKIGY KKLNFLLKVP ILNNIVKKKI
HEGLGLEHCH LLGSGSAPIP PSLIAWYHKI GLNISEAWGM TENSAYSIIN YPFDPAKIGT
VGRAIEGCSI KQTESGELLV KSPGLMTGYY KQPEMTAACF DPDGYFHTGD LCEIDNDGCV
TITGRVKDNF KTSKGKYVAP VPIERKLAQD PHIELLCVIG SGLPHPIALV QLSEGASLQP
REEVRTSLKA TLDSINPNLE SHETLDAIIV VSEPWDVDND VLTPTLKIKR HVLEKRFSER
VDGIRGGKVR WEEEL
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