| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0330 |
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| Symbol | |
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| ID | 5610026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 382787 |
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| End bp | 383719 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931162 |
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| Product | CaCA family Na(+)/Ca(+) antiporter |
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| Protein accession | YP_001472071 |
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| Protein GI | 157373471 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0530] Ca2+/Na+ antiporter |
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| TIGRFAM ID | [TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein
[TIGR00378] calcium/proton exchanger (cax) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0502313 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTCATTT TACTGTCCAT TATCGGCGGT TTCCTAATAT TAACACTCGG TGCCGAGGCC
TTGGTTCGAG GTGCGAGCGC TATCGCACTG AGACTGGGAA TTGCACCTCT GGTTATCGGC
TTGACCATAG TGGCATTTGG TACCAGTGCA CCCGAGCTAG CCGTAAGTTT AAAGTCTGCA
CTCGCTGGCA AGAGTGGTAT CGCACTGGGT AATGTCATCG GCTCAAACAT CGCCAATATT
GGCCTTATCT TGGCAATAAC CGCCTTAATC CGACCCATCC AGGTGCAATC TCAGATGGTA
AGACGCGACA TTCCTATCAT GATTGTCGCC TCACTCCTTT TCTGGGGCTT ACTGCTCGAC
GGTGGCCTAA GTTTCTGGGA TGGTGCCCTG CTCACCACGC TATTGGTCGG CTATTTGGGC
TTCAGCTATA TCAGCTCAAG AAATGAGGGC AATAGTGAAG AGATCGATGA ACGACCACAA
AGTCCGCTGT TATCTGTGGT CCTGATAATC CTTGGTATTA CCATGCTGGT CACAGGCGGG
ATCCTATTTG TCGATGGCGC CGTAGAGTTA GCCAAAACCT TAGGGATCAG CGAAGTGATC
ATAGGGCTGA CCATAGTCGC CATAGGAACA AGTATGCCTG AACTTGTCAC CTCGGTTGTG
GCCGCGAGAA AAGGAGAGAG TGATATAGCC ATAGGCAATA TTGTCGGCTC AAACCTATTC
AATATTCTTG GCATATTGGG TATCACAGCA CTCATACATC CCATTGCCGC CGGGGGAGTA
CAAAGTCTTG ATTTGATGGT TATGCTGCTA TTGGCAATCC TCATCTTACC CTTCGCCTGG
TCGGGTTTTA GGATCGGTCG CCGGGAAGGG GGGATTCTAT TAGCCGGATA TATCTCATAT
ATCGGCTACC TCGTGGCTCA AGCTACAGCT TAG
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| Protein sequence | MLILLSIIGG FLILTLGAEA LVRGASAIAL RLGIAPLVIG LTIVAFGTSA PELAVSLKSA
LAGKSGIALG NVIGSNIANI GLILAITALI RPIQVQSQMV RRDIPIMIVA SLLFWGLLLD
GGLSFWDGAL LTTLLVGYLG FSYISSRNEG NSEEIDERPQ SPLLSVVLII LGITMLVTGG
ILFVDGAVEL AKTLGISEVI IGLTIVAIGT SMPELVTSVV AARKGESDIA IGNIVGSNLF
NILGILGITA LIHPIAAGGV QSLDLMVMLL LAILILPFAW SGFRIGRREG GILLAGYISY
IGYLVAQATA
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