| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0322 |
|---|
| Symbol | |
|---|
| ID | 5609588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 375306 |
|---|
| End bp | 376670 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931154 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472063 |
|---|
| Protein GI | 157373463 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00168086 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAGT TATTGAAATC TTGGTTATCC AAGGGGCCAT CGAGCCAACA ACTTATCAGC
TTCAATCACC ATGATATTGT CAACGGTGCC GCCTTTACGA GCCAGGTTAC CAATATCCAC
CAGCAACTGA TCCAATCAAA ATCACAGCGT TGGTTATTGG CATGCGAAAG TAGCGACCTG
TTTGCAGTGG GATTATGTGC CGCACTGCTT GCGGGCAAAG AGATAATCCT GCCATCAAAC
ACTCAGACTG GCACCTTGAG TGAGATAACC CATGAGTTCG ATGGAGTCAT CTCTGATCAG
CCTCTTTGTG AAGGTAAAAC CTTCATCATG CTGAAGAGAG ACCTCCATGA AACCAATAAT
GTCTGGCCAA AGTGTGACAA TTACGGAAAG CTCGTTCTCT TTACTTCCGG CAGTAGCGGT
CATCCCAAGG CCGTATGTAA AACACTCGAG CAGTTAGATG CTGAAGTCAG CATCCTTGAG
AACACTTTCG CCAAGCATCT TCCGCACTGC AGCGTGATAT CGACCGTTTC TCATCAACAC
ATCTATGGAC TGTTGTTTAA GATCCTGTGG CCACTCGCGG CCAGCCGTCC ATTTTTGAGC
GATATTGTCG AATACCCGGA AACGCTGACC TATTACACCA GTTTATTCCC CAACCTTTGC
TTGATCAGTA GCCCGGCTCA GTTATCCCGT CTTCCGGAAT CATTGGATAA CGAACGCCAG
TTAAGATCGC CAAGCCTAGT ATTCAGCTCT GGCGGACCGC TTAATTTCGA GGCGGCCCAA
GGCATCGCTC ACTGTTATGG CCGACAACCC ATAGAGGTTT TCGGCAGCAC AGAAACTGGC
GGAGTAGCCT ACCGTAGACA GACTCAACAA GATCAAGCCT GGCGCGTTTT CGACAGCATT
GATATCCGCC AAGACGATAA AGATGGCGCC TTGCTGCTTA AATCACCCTA TCTTGAGAAT
GATAAATGGC TGAGATGCGA AGATAAGATC ACTCTTCTCA AGCCCGGTGA GTTTCAGTTA
CAGGGACGAC TCGACCGGGT AGTAAAAATC GAAGAGAAGC GTCTGTCACT GGTGCAGATG
GAGGCCCTGT TAGAGAGCCA CCCCTTGGTC AGTCAGGCGG CACTGCTTGT CTTAGATCAG
CCACGCACGC AACTTGGGGC CGTCATTGAG TTATCTCAGC AAGGCAAAGA GCAGTTAGAT
ACCGAGGGAA AGCTCAGCCT TAATAATCTG TTTAAGGCTC ATCTGTTGAC CCAGTTCGAA
CGAGTCACCC TGCCCAGACG TTGGCGCTAC CCTGAAACTG TTCCCGTGAA CTCTCAGGGA
AAAAGATTAG CTAATCAATT ATCTGAGTTG TTCGAACATG ATTAA
|
|---|
| Protein sequence | MTELLKSWLS KGPSSQQLIS FNHHDIVNGA AFTSQVTNIH QQLIQSKSQR WLLACESSDL
FAVGLCAALL AGKEIILPSN TQTGTLSEIT HEFDGVISDQ PLCEGKTFIM LKRDLHETNN
VWPKCDNYGK LVLFTSGSSG HPKAVCKTLE QLDAEVSILE NTFAKHLPHC SVISTVSHQH
IYGLLFKILW PLAASRPFLS DIVEYPETLT YYTSLFPNLC LISSPAQLSR LPESLDNERQ
LRSPSLVFSS GGPLNFEAAQ GIAHCYGRQP IEVFGSTETG GVAYRRQTQQ DQAWRVFDSI
DIRQDDKDGA LLLKSPYLEN DKWLRCEDKI TLLKPGEFQL QGRLDRVVKI EEKRLSLVQM
EALLESHPLV SQAALLVLDQ PRTQLGAVIE LSQQGKEQLD TEGKLSLNNL FKAHLLTQFE
RVTLPRRWRY PETVPVNSQG KRLANQLSEL FEHD
|
|---|
| |