| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0319 |
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| Symbol | |
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| ID | 5609719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 371673 |
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| End bp | 373232 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931151 |
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| Product | histidine ammonia-lyase |
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| Protein accession | YP_001472060 |
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| Protein GI | 157373460 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2986] Histidine ammonia-lyase |
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| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase
[TIGR01226] phenylalanine ammonia-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00171339 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTCAGA CTAATCAATC AAACCCAAAC GAGATGATTG TTCATTTTGG TCACAGGGCC
TTATCCCTGG AAGATGTCGT TGCAGTAGCC AAAGGCGCTA AAGCAAAGTT AAAAGAGAGT
CATGATTATC AGACCTATAT TCAAAAAGGG GCTAACTTCA TCGATAGCCT GCTTAATGAA
GAGGGGGTGG TCTATGGTGT CACAACCGGT TATGGCGACT CTTGCACGGT TACCGTTGGC
CTGGATCTGG TCCATGAACT CCCCCTGCAC CTCACTCGAT TTCATGGCTG CGGCTTAGGC
GAAATACTCT CCCCTATGCA GGCACGCGCC GTGATGGCTT GCCGACTAAG TTCGCTCGCC
GTAGGTAAAT CCGGTGTGAG CTACGAGCTA TTGCAGAGAA TTGAAAACCT GCTCAACCTC
AATATCATTC CGGTGATCCC GGAGGAAGGT TCTGTAGGGG CCAGTGGCGA TCTGACTCCA
CTCTCGTATC TGGCCGCGGT ACTCGTGGGC GAGCGTGATG TCATCTATGA AGGTGTGCGT
CAGCCCACCG CCGACGTGTA TGCCAAGCTC AATATCTCCC CACTGAGACT GCGCCCGAAA
GAGGGGTTAG CCCTTATGAA TGGCACCGCC GTCATGACGG CGCTGGCGTG TTTAGCCTAT
GACAGAGCCC AGTATCTTAG CCGGCTTGCG AGCCGCATCA CCGCGATGGC ATCACTCACT
CTGAAGGGGA ACTCTAACCA CTTCGATGAT ATCTTGTTCG CCGCTAAGCC TCATCCGGGA
CAAAACCAGA TAGCCGCTTG GATCCGCGAA GATCTCAACC ATCATGAGCA TCCAAGAAAT
TCAGATAGAC TCCAGGATAG ATACTCTATC CGCTGCGCGC CGCACATTAT CGGTGTATTG
CAAGACGCAC TGCCTTTCAT GCGTCAGTTT ATCGAGACTG AGTTAAACAG TGCCAACGAT
AACCCTATCG TAGACGCCGA AGGCGAGCAT ATTCTTCATG GCGGTCACTT CTATGGCGGC
CACATCGCCT TTGTCATGGA TTCCATGAAA AATACCGTCG CCAATATCGC CGATCTCATC
GATCGTCAGA TGGCTCTGGT GATGGATCCT AAGTTCAATA ACGGTCTCCC CGCTAATCTG
TCGGCATCGA CAGGGGCACG GCGCGCAATT AACCATGGTT TCAAAGCCGT GCAGATAGGC
GTCTCCGCCT GGACAGCCGA GGCATTAAAA AACACCATGC CCGCCAGCGT ATTTTCCCGC
TCTACAGAGT GTCACAATCA AGATAAAGTC AGCATGGGTA CCATAGCAGC ACGCGATTGT
ATGCGTGTAC TCCAGTTGAC GGAGCAGGTT GCCGCAGCCG CGCTGTTAGC CATGACGCAA
GGGATAAATT TACGGATCTC ACAAGAGGAG CTTTGCCACT CATCGCTGAC TCCATCCGTC
GCTAAGACCC TGGAGCAAGT TAAGGCTGAC TTTGAACTAC TGACAGAGGA TAGACCGCTA
GAATCTGTCC TCAGGCAGAC CGTAGACAAG ATCCAGCATG GTTTATGGGA AGTGTGTTAA
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| Protein sequence | MTQTNQSNPN EMIVHFGHRA LSLEDVVAVA KGAKAKLKES HDYQTYIQKG ANFIDSLLNE
EGVVYGVTTG YGDSCTVTVG LDLVHELPLH LTRFHGCGLG EILSPMQARA VMACRLSSLA
VGKSGVSYEL LQRIENLLNL NIIPVIPEEG SVGASGDLTP LSYLAAVLVG ERDVIYEGVR
QPTADVYAKL NISPLRLRPK EGLALMNGTA VMTALACLAY DRAQYLSRLA SRITAMASLT
LKGNSNHFDD ILFAAKPHPG QNQIAAWIRE DLNHHEHPRN SDRLQDRYSI RCAPHIIGVL
QDALPFMRQF IETELNSAND NPIVDAEGEH ILHGGHFYGG HIAFVMDSMK NTVANIADLI
DRQMALVMDP KFNNGLPANL SASTGARRAI NHGFKAVQIG VSAWTAEALK NTMPASVFSR
STECHNQDKV SMGTIAARDC MRVLQLTEQV AAAALLAMTQ GINLRISQEE LCHSSLTPSV
AKTLEQVKAD FELLTEDRPL ESVLRQTVDK IQHGLWEVC
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