Gene Ssed_0309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0309 
Symbol 
ID5610001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp361522 
End bp362268 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content47% 
IMG OID640931141 
Producthypothetical protein 
Protein accessionYP_001472050 
Protein GI157373450 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000322809 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000114603 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATAAAAC ATATCACCTT AGCCTTAGTG CTAACCCTAA GCTCCGTTGC CGGTCAGGCA 
CTTGCCGAAA CATTTACCGA AGCCGAATAT GTGGCCATTT TTAACGGTGA TAATATTAAT
AAGCAGAAGC AAGCCATCGA CTCTCTGGTA CTGGCAGGTC TGTCGGATCC TAAGGTATTC
GATACATTGC ACGCTAAATT TAAGGCGTCA CTGCCACAGG CCGTCAACAA CGCCAGCATC
GATTACAGCG CCTGGCTACT TAAAGGGCTA GCCTACTCCG GAGATGAGAA GTACCTGCAA
ACTTTCAACG AGATCATAGC AGGCGACTAC CCAGGTAAGC TGAAGAAGTA TGCAAAGAAG
TCTATCCCGA CTCTTAAGCA GTATAAGAGC TGGACGCCTA TCCTAAGTGA CAAGAGCCAA
TATGCAGCCT CTGAAACCCG AGAGGTAAAT GTGATTGCTA ATGCGCTGAG AAGTGATGAG
TTAGAGTTAA AGCGTTACGC CGCCAAACGA ATGATCAATC ACTCACTGTA CGCTCCCTAT
CTGTTATCGG TCTTAGACAG TGAACTCAAG GATCCACGCC TGCTCAAGCA TGAAAAGCTC
GCAATTAACA CTTATGCCTA CATGGCAAAG GCGCTGGCAA GCTCGGGAGA GCCGGAGTAC
AAGGCCACTC TGGAGCATAT CGCAAAGCAA AGCTCAGAGA GAAAGTTACA AAAATACGCA
AAGAAGTACC TGAAAACCTA CTATTGA
 
Protein sequence
MIKHITLALV LTLSSVAGQA LAETFTEAEY VAIFNGDNIN KQKQAIDSLV LAGLSDPKVF 
DTLHAKFKAS LPQAVNNASI DYSAWLLKGL AYSGDEKYLQ TFNEIIAGDY PGKLKKYAKK
SIPTLKQYKS WTPILSDKSQ YAASETREVN VIANALRSDE LELKRYAAKR MINHSLYAPY
LLSVLDSELK DPRLLKHEKL AINTYAYMAK ALASSGEPEY KATLEHIAKQ SSERKLQKYA
KKYLKTYY