Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0302 |
Symbol | rbn |
ID | 5610302 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 356728 |
End bp | 357624 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640931134 |
Product | ribonuclease BN |
Protein accession | YP_001472043 |
Protein GI | 157373443 |
COG category | [S] Function unknown |
COG ID | [COG1295] Predicted membrane protein |
TIGRFAM ID | [TIGR00765] YihY family protein (not ribonuclease BN) |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.223678 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000133239 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATACATC TAAAGCAGCG CCTGGCGGAA GATCAGATAA ATATTCGTGC CGGGCACTTA GCCTATGTCA CTCTGCTCTC CCTGGTGCCT ATGGTCGCCG TGACTATGTC AATGCTGTCG GCGTTTCCAG TATTCAGTGG GATCAGGGGG CAGATCGAGG GGTTTATCTA TAACAACTTC CTCCCCGCCG CCGGGGATAC GGTGCAAGTT TATATCAACG AATTCGTCAG TAATGCATCT AAGGGGACGG CCGTGGGTAT TGCCGCCCTG ATGGTGGTGG CGATCATGCT GATCTCCGCT ATCGATAAGG CGTTGAATAA TATCTGGCGA ACGACTGAGA AACGTTCCAT GGTGGTGTCA TTTTCGATGT ACTGGATGGT GTTGACCTTA GGACCGGTAT TGATGGGGGC GAGCCTGGTT GCCACCTCCT ATGTTGTGTC GTTAAAGGTA TTTAACGGCT CCGACTTGTC CGGTGTTGTT CCCGTGCTGG TTGAACGATT ACCTATGTTC TTCTCGGTTG CCACCTTCCT GTTGATCTAT ATGGTGGTGC CTAATATTAA GGTTAAGTTC TTCCATGCGC TGCTAGGCGC GATTGTCGCC GCCCTGTTAT TTGAGTTCGG TAAGAAAGGC TTCGCAATAT ATCTGACTAA GTTTCCAACC TATGAGGCTA TTTATGGTGC CCTGGCGACG ATCCCCATTC TGTTTATGTG GGTCTATCTC TCCTGGATCA TCGTCTTGTT AGGTGCCGAG ATCACCGCTG CGATGCCTGA ATATCTCGAT AAGAGACAGT CGGGTAAAGA TGAGGAGTCA GAAAAGAAGG CGGAGGCCCA TGATCCGCAG ATTAGCTTTT CTATCTCAAC TGCCGTTAAC GAATCTAAAA AAGAAAACCG TCAATAA
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Protein sequence | MIHLKQRLAE DQINIRAGHL AYVTLLSLVP MVAVTMSMLS AFPVFSGIRG QIEGFIYNNF LPAAGDTVQV YINEFVSNAS KGTAVGIAAL MVVAIMLISA IDKALNNIWR TTEKRSMVVS FSMYWMVLTL GPVLMGASLV ATSYVVSLKV FNGSDLSGVV PVLVERLPMF FSVATFLLIY MVVPNIKVKF FHALLGAIVA ALLFEFGKKG FAIYLTKFPT YEAIYGALAT IPILFMWVYL SWIIVLLGAE ITAAMPEYLD KRQSGKDEES EKKAEAHDPQ ISFSISTAVN ESKKENRQ
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