Gene Ssed_0302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0302 
Symbolrbn 
ID5610302 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp356728 
End bp357624 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content49% 
IMG OID640931134 
Productribonuclease BN 
Protein accessionYP_001472043 
Protein GI157373443 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.223678 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000133239 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATACATC TAAAGCAGCG CCTGGCGGAA GATCAGATAA ATATTCGTGC CGGGCACTTA 
GCCTATGTCA CTCTGCTCTC CCTGGTGCCT ATGGTCGCCG TGACTATGTC AATGCTGTCG
GCGTTTCCAG TATTCAGTGG GATCAGGGGG CAGATCGAGG GGTTTATCTA TAACAACTTC
CTCCCCGCCG CCGGGGATAC GGTGCAAGTT TATATCAACG AATTCGTCAG TAATGCATCT
AAGGGGACGG CCGTGGGTAT TGCCGCCCTG ATGGTGGTGG CGATCATGCT GATCTCCGCT
ATCGATAAGG CGTTGAATAA TATCTGGCGA ACGACTGAGA AACGTTCCAT GGTGGTGTCA
TTTTCGATGT ACTGGATGGT GTTGACCTTA GGACCGGTAT TGATGGGGGC GAGCCTGGTT
GCCACCTCCT ATGTTGTGTC GTTAAAGGTA TTTAACGGCT CCGACTTGTC CGGTGTTGTT
CCCGTGCTGG TTGAACGATT ACCTATGTTC TTCTCGGTTG CCACCTTCCT GTTGATCTAT
ATGGTGGTGC CTAATATTAA GGTTAAGTTC TTCCATGCGC TGCTAGGCGC GATTGTCGCC
GCCCTGTTAT TTGAGTTCGG TAAGAAAGGC TTCGCAATAT ATCTGACTAA GTTTCCAACC
TATGAGGCTA TTTATGGTGC CCTGGCGACG ATCCCCATTC TGTTTATGTG GGTCTATCTC
TCCTGGATCA TCGTCTTGTT AGGTGCCGAG ATCACCGCTG CGATGCCTGA ATATCTCGAT
AAGAGACAGT CGGGTAAAGA TGAGGAGTCA GAAAAGAAGG CGGAGGCCCA TGATCCGCAG
ATTAGCTTTT CTATCTCAAC TGCCGTTAAC GAATCTAAAA AAGAAAACCG TCAATAA
 
Protein sequence
MIHLKQRLAE DQINIRAGHL AYVTLLSLVP MVAVTMSMLS AFPVFSGIRG QIEGFIYNNF 
LPAAGDTVQV YINEFVSNAS KGTAVGIAAL MVVAIMLISA IDKALNNIWR TTEKRSMVVS
FSMYWMVLTL GPVLMGASLV ATSYVVSLKV FNGSDLSGVV PVLVERLPMF FSVATFLLIY
MVVPNIKVKF FHALLGAIVA ALLFEFGKKG FAIYLTKFPT YEAIYGALAT IPILFMWVYL
SWIIVLLGAE ITAAMPEYLD KRQSGKDEES EKKAEAHDPQ ISFSISTAVN ESKKENRQ