| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0299 |
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| Symbol | |
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| ID | 5609751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 353807 |
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| End bp | 355450 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931131 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001472040 |
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| Protein GI | 157373440 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00444177 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000221219 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGATAA ACGACATAGA TCCGAAAGAT TTTCTGGAGT TTGTTCCCGA AGAGGGGATC
ATTAAGCTCA AAGATCAACG CATGTTACTG TTCGATGCCG TAGCCTTGGG TTTACTGCGT
AAGGAGCTGA TAGATACCTT CGGCCATTTT GCCGCGCGTA GTATATTGAC TCGGTTTGGT
TATGCTCATG GCTGGCGTAC GGCGGAATTA TTGCGGTCAG AATATCCGAC CATATTTTCT
CAAGATGAGG GTGGCTCCTA CCTTCACATG TTGTTTGGGT TGACCAGAAC ATGCGACTTC
AACCATTCGG ACAATTTGGC CTCAGGCTTT TCGATGCAGG TGTGTTGGGA TAACTCCTAT
GAAGCGGAGC AACATCATCT GCTCTTCGGG GTTGCCGAGG AACCCATCTG CTGGACGCTG
ACAGGGTTTG CCAGTGGTTA TGAATCCTGT AAGCAGGAGC GTGAAGTCTA CTTTATCGAA
GACAAGTGCC GCGGGGCCGG CGATCCGTTT TGTCGTATCG TGGGGAAGTT CAGAGAAGAT
TGGGGAGATG AACTCGAGGC TCACCAGCCA TTTTATAGCA TGGAGTCAGC CGATACCCTG
CTCAAAGGGC TGACTCAAAA GTTAAAGAGA ACCGAGCTGG ATCTCAAGCG TCAGCAGGAG
CAGTTGAGCC TCTATAATGC CAACCTTCAT AACATTTCCG GCTTAGTGAC CCGCAGTAAT
GAGATGAAAC GGATTGTCGA GTTGGCCCGG CGTATTGCCA AGGTGGACTC GTCCGTCGTG
GTCTCGGGAG AGAGCGGTGT CGGTAAAGAA CGTGTCTCCC GGTTTATTCA TGACCATTCA
TCGCGCGCCT CAGGACCCTT CGTCGCCGTT AATTGCGGAG CTCTGACTGA AACACTGCTG
GAGAGTGAAC TATTCGGTCA TAAGAAGGGC GCCTTTACCG GCGCCGACAG AGATCATATC
GGCTTATTTG AGCAAGCCAA CGAAGGTACG CTGTTTCTCG ATGAGATCGG TGATATATCG
GCGGCGATGC AGGTTAAGTT ACTTAGGGCA CTGCAGGAGA AAGAGATAAG GCGGGTCGGG
GATAGTCAGG ACAGAAAGGT CAATGTACGT ATCATTGCGG CCACTCATCG AAATTTGAGC
GAAGAGGTGA AAGCCAATCG TTTCCGGGCC GACCTCTATT ACAGGCTCTG TGTGATTGAG
CTGACCATTC CCCCTCTGCG GGACAGGGCG GAAGATATTC TGTTTATTGC TAAGGTTATT
CTGGAGCAGG TGAATAAGGA TATGAATCGT AATGTCATCG GCTTCTCTCC GAAGGCCTCC
GAGCTGCTTC TGAGCTACGG TTGGCCCGGC AATGTGCGTG AGTTACAGAA TGTGGTTGAG
CGAAGTGTTG CCCTGTGTAT GGGCCAGGAG ATCACTCCAG GCGACTTTCC CGAGACCATG
ACCCAAAACC CGGTATTAAA GTCTCAGCTT TCAACGCCGA CCCTGTCGTT GGAGGAGATG
GAGATGGAAT ATATTCTATC TGTGCTTAAG TCGTGTGGCG GAAATAAAAC CCTTGCCATG
GAGAAGCTTA AAATCGGCAA GACGACCCTA TATCGAAAGC TCAATGATTA TCGAAAGCTG
TCAGAGGAGC TGGTGACAGC TTGA
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| Protein sequence | MLINDIDPKD FLEFVPEEGI IKLKDQRMLL FDAVALGLLR KELIDTFGHF AARSILTRFG
YAHGWRTAEL LRSEYPTIFS QDEGGSYLHM LFGLTRTCDF NHSDNLASGF SMQVCWDNSY
EAEQHHLLFG VAEEPICWTL TGFASGYESC KQEREVYFIE DKCRGAGDPF CRIVGKFRED
WGDELEAHQP FYSMESADTL LKGLTQKLKR TELDLKRQQE QLSLYNANLH NISGLVTRSN
EMKRIVELAR RIAKVDSSVV VSGESGVGKE RVSRFIHDHS SRASGPFVAV NCGALTETLL
ESELFGHKKG AFTGADRDHI GLFEQANEGT LFLDEIGDIS AAMQVKLLRA LQEKEIRRVG
DSQDRKVNVR IIAATHRNLS EEVKANRFRA DLYYRLCVIE LTIPPLRDRA EDILFIAKVI
LEQVNKDMNR NVIGFSPKAS ELLLSYGWPG NVRELQNVVE RSVALCMGQE ITPGDFPETM
TQNPVLKSQL STPTLSLEEM EMEYILSVLK SCGGNKTLAM EKLKIGKTTL YRKLNDYRKL
SEELVTA
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