Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0285 |
Symbol | |
ID | 5612516 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 335181 |
End bp | 335858 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931117 |
Product | ThiJ/PfpI domain-containing protein |
Protein accession | YP_001472026 |
Protein GI | 157373426 |
COG category | [R] General function prediction only |
COG ID | [COG0693] Putative intracellular protease/amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000246139 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACATAT TGATGGTACT GACTTCTCAC GACAAGCTTG GCGATACAGG ATTAAAAACA GGTTTTTGGT TAGAGGAATT TGCGAGTCCT TACTACCGTT TTAAAGACAA GAACTTCAAC ATCACTTTAG CATCGCCAGC CGGCGGACAG CCGCCACTGG ATCCAACCAG TGAGCAAGCA GACTTTCAAA CTGCAGCAAC AGACCGCTTC AATCAAGACA GTGAAACCCA ACAGCAGTTA GCTACCACTC TTACTCTGGC CAGCATTAAG GCCGAAGATT ATGATGCCAT CTTCTATCCT GGCGGCCACG GTCCACTGTG GGACCTGACC AACGACGCTC ACTCAATTGC ATTGATCCAA GCCTTTTATC AGGCGAATAA GCCTGTCGGT CTGGTCTGTC ATGCTCCGGG GGCTCTTAAA AATGTAAAAT CAGCCGATGG CACGCCATTG GTACAAGGTA AGCGTGTTAC TGGTTTTACC AACACCGAAG AGGCTGCCGT TCAATTAACG GATGTCGTAC CATTTTTAGT CGAAGAGATG ATGCAAGAAA ACGGCGCTTT GTATAGTAAG GGCGATGACT GGGCAAGTTA CCTTGCTGTT GATGGAAATC TGGTGACTGG GCAAAATCCT GCGTCATCTG AAGTAGTTGC TGACGAGATG ATTAAACAGC TAGGTTAA
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Protein sequence | MNILMVLTSH DKLGDTGLKT GFWLEEFASP YYRFKDKNFN ITLASPAGGQ PPLDPTSEQA DFQTAATDRF NQDSETQQQL ATTLTLASIK AEDYDAIFYP GGHGPLWDLT NDAHSIALIQ AFYQANKPVG LVCHAPGALK NVKSADGTPL VQGKRVTGFT NTEEAAVQLT DVVPFLVEEM MQENGALYSK GDDWASYLAV DGNLVTGQNP ASSEVVADEM IKQLG
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