| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0283 |
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| Symbol | |
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| ID | 5610444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 333272 |
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| End bp | 334312 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931115 |
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| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
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| Protein accession | YP_001472024 |
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| Protein GI | 157373424 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000323653 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATATAA AACACCTGTT CAATAACCTT GTAACAGCAG TCATGGTCAT CGATGTTGAT
CTCAAGCTTT GCTATGCCAA CGCAGCGGCT GAGCAGCTCT TAGGTGTGGG AAGCCATCGC
TTAACCGAAC ATGTTCTATC AGACAGTTTT CAAATCCTTG GCGTAAGTAC CGATTTATTG
AGTAAGGCTA TCAGAGAAAA CCAAGGGCTC ACGGTTAATA CCGCCCCCCT GGTAACATTG
GATAACCAAC ATCATACCGT AGACATAACG CTCACCCCTT TAGAGCAGGA ACAGGGCTTA
GGGCTGTTAG AACTCAGGCA GGTAGATCAA CAGAGGCGTA TTCATCAACA ACTGACTTTA
GATGCGCAAC AACAAGCCGC TCAATACTTG GTGAGAAACC TGGCGCATGA AATCAAAAAC
CCTTTGGGTG GCCTTCGTGG TGCAGCGCAA CTGCTCTCTC GTGAACTACA TGATCCGCAG
TTGAATGAGT TTACCGATCT TATTATCGAG CAAGCCGACC GACTACGAAA TCTGGTGGAC
AGATTACTCG GCCCCCAGAG ACCAACCCAA CATAGCCTGC ATAATATTCA TGAAGTCGTT
CAAAAAGTAC TTAACCTTGT GAACATGGCC CTTCCACCGA ACATCACGCT GAAGCAAGAT
TACGACCCTT CCATACCCGA TATTCAAATG GATCCTGAAC AGCTGCAACA AGCCGTACTC
AACATAGTTC AAAATGCAAT TCAGGCACTC GACACCGCAG GCGGGGAGAT ATTGATAAGG
ACGCGCACCC AGCACCAAGT CACCATCGGC ACTTTAAGAC ACAAACTTGT ATTAGCCTTA
TCCATCATAG ACAACGGCCC AGGTATCAAA CCTGAACTAT TAGACACACT TTTTTACCCT
ATGGTAACAG GTCGTGATAA CGGTTCAGGA CTTGGTTTAT CGATTGCGCA TAACTTTGCT
CGGCTACATG GCGGTAGAAT TGATTGCCAT TCCAAGCTTG GGAGGACTGA ATTCACAATC
TTACTTCCCA TAAAAAACTA A
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| Protein sequence | MDIKHLFNNL VTAVMVIDVD LKLCYANAAA EQLLGVGSHR LTEHVLSDSF QILGVSTDLL
SKAIRENQGL TVNTAPLVTL DNQHHTVDIT LTPLEQEQGL GLLELRQVDQ QRRIHQQLTL
DAQQQAAQYL VRNLAHEIKN PLGGLRGAAQ LLSRELHDPQ LNEFTDLIIE QADRLRNLVD
RLLGPQRPTQ HSLHNIHEVV QKVLNLVNMA LPPNITLKQD YDPSIPDIQM DPEQLQQAVL
NIVQNAIQAL DTAGGEILIR TRTQHQVTIG TLRHKLVLAL SIIDNGPGIK PELLDTLFYP
MVTGRDNGSG LGLSIAHNFA RLHGGRIDCH SKLGRTEFTI LLPIKN
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