Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0282 |
Symbol | |
ID | 5611948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 331803 |
End bp | 333218 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931114 |
Product | nitrogen metabolism transcriptional regulator NtrC |
Protein accession | YP_001472023 |
Protein GI | 157373423 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.675957 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000421571 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTATAA CGGAACAAGT TTGGGTGCTC GATGATGACA GCTCTATTCG TTGGGTAGTT GAAAGAGCAT TAAAGGGCGC CAGTATTACC AGTGCAAGCT TTGCGGCAGC CGAATCACTT TGGGAGGCGC TCGAACTGGC ACAGCCTAAA GTCATTATTT CAGATATTAG AATGCCAGGA ACGGATGGAT TGAGTCTACT CGAACGCATT CAAGTTCATT ACCCCCACAT TCCTGTAATT ATAATGACGG CACATTCGGA TCTGGACAGT GCAGTTAGCG CATATCAAGC CGGGGCATTC GAATATCTGC CGAAACCATT TGATATCGAT GAGGCCATTG CACTTGTAGA GCGAGCATTG ACCCACTCTA CCGAGCAGGC AAGTAATACT CCTGAGGAGA TACAGGTCAA AGCACCTGAG ATAATAGGTG AGGCGCCGGC AATGCAGGAG GTATTTCGCG CGATAGGCCG ATTATCGAGA TCCTCTATCA GCGTGCTGAT TAATGGTCAG TCCGGAACGG GTAAGGAACT GGTTGCAGGT GCACTACACA AGCACAGCCC ACGAAAAGAA AAACCATTTA TCGCGATTAA TATGGCTGCA ATACCTAAAG ATTTGATTGA GTCTGAACTC TTCGGCCATG AAAAGGGGGC GTTTACCGGA GCAGCAGGTG TCAGACAAGG CAGGTTTGAA CAGGCAAATG GAGGCACCCT GTTTCTGGAC GAGATTGGTG ATATGCCACT CGATGTTCAA ACACGATTAT TGAGAGTCTT AGCAGATGGT CAATTCTATC GAGTCGGTGG ACACTCTCCT GTTCAAGTTG ATGTAAGGAT CATTGCTGCT ACTCACCAGG ATCTTGAACT GTTAGTACAG AAAGGTGATT TTCGAGAAGA TCTATTTCAC CGCCTTAATG TCATAAGGGT TCATCTGCCA CCATTATCAC AACGACGAGA AGATATTCCT CAGCTCGCTC GTCACTTCCT CTCTTCTGCT GCTAAAGAGA TAGCGGTTGA ACCTAAGGTT CTGACCTCTG AAACGGCAAA AAAACTCTCT GAATTGCCTT GGCCTGGAAA CGTGCGTCAG CTTGAGAACA CATGCCGCTG GTTGATGGTA ATGGCATCCG GGCAGGAAAT TTTACCTCAA GACCTCCCCC CTGAGCTGCT CAAAGAACCC AACAGCTCCA ATATAGATCG CTCAGGAGAA ACTGCTGATT GGCAGGAGTC TTTAAAGAAC TGGATTAACC AACGTCTGAA AGAAGGTGAA AGTGATCTGC TTACCGAAGT ACAACCAGCT TTTGAGCGCA TACTACTCGA AACGGCCTTG GAACATACTA ACGGTCATAA ACAAGAAGCA GCTAAACGCT TAGGTTGGGG TCGCAATACA CTGACACGAA AATTGAAAGA ACTGGCTATG GAGTAA
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Protein sequence | MSITEQVWVL DDDSSIRWVV ERALKGASIT SASFAAAESL WEALELAQPK VIISDIRMPG TDGLSLLERI QVHYPHIPVI IMTAHSDLDS AVSAYQAGAF EYLPKPFDID EAIALVERAL THSTEQASNT PEEIQVKAPE IIGEAPAMQE VFRAIGRLSR SSISVLINGQ SGTGKELVAG ALHKHSPRKE KPFIAINMAA IPKDLIESEL FGHEKGAFTG AAGVRQGRFE QANGGTLFLD EIGDMPLDVQ TRLLRVLADG QFYRVGGHSP VQVDVRIIAA THQDLELLVQ KGDFREDLFH RLNVIRVHLP PLSQRREDIP QLARHFLSSA AKEIAVEPKV LTSETAKKLS ELPWPGNVRQ LENTCRWLMV MASGQEILPQ DLPPELLKEP NSSNIDRSGE TADWQESLKN WINQRLKEGE SDLLTEVQPA FERILLETAL EHTNGHKQEA AKRLGWGRNT LTRKLKELAM E
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