| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0281 |
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| Symbol | |
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| ID | 5610580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 317399 |
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| End bp | 318268 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931107 |
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| Product | cation diffusion facilitator family transporter |
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| Protein accession | YP_001472022 |
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| Protein GI | 157373422 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0053] Predicted Co/Zn/Cd cation transporters |
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| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000230949 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000100578 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAAACAGA CTTCCCAATA TGACTTCTGG GTCAAGTTAG CTAGCCGCGC AGCTGTGGCT
ACTGCCTTGA CCCTTATTAT TATCAAGATG GCGGCCTGGA TGTACTCAGG TTCGGCCAGT
ATGTTAGCGT CATTAACAGA TTCATTTGCC GATGCCCTAG CTTCAATAGT TAACTTCATC
GCGATCCGGT ATGCAATCGT ACCAGCCGAT CAGGATCATA GGTACGGACA TGGTAAGGCA
GAGCCACTGG CAGCCTTAGC TCAGTCAGCA TTTATTCTTG GTTCAGCCTT CCTGTTACTG
TTTCACGGTG GCGATCGATT AATTAATCCG ACGCCAATTA ATCATGCCAT GGTAGGCGTT
GTCGTATCCG TTGTCGCCAT TGTATTAACG TTTGCCTTGG TCTTATTGCA GAAAAGAGCC
TTGGCAGAGA CTTCCAGTAC AGTAGTAGAA GCCGACGCGC TACATTATAA GTCTGACCTG
TTTCTGAATG CAGCGGTATT ACTCGCATTA GTCTTATCTC AGTATGGTTG GTGGTGGGCC
GATGGTCTGT TTGCCATTCT TATTGCCATC TTTATTGGTC AACAAGCCAT TGGGCTTGGC
TACCGTTCGA TTCAGTCACT GCTAGATAGA GAGTTGGATG CTGATACTCG ATTGACGATC
GTTGAGTTAA TCCAGGAAGA TCCGAGAGTA AACGGGTTTC ATGACCTTAG AACTCGCGAG
TCAGGAAAGA CCACTTTCAT TCAATGTCAC TTAGAACTGG ATGGCGATCT TACATTAAGA
GATGCCCATA CAATCGCAGA TGAAACCGAG GAAAGGTTAA GAAATGCTTT TGATCATGCC
GAAGTGATCA TCCATCAAGA TCCTGTATAA
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| Protein sequence | MKQTSQYDFW VKLASRAAVA TALTLIIIKM AAWMYSGSAS MLASLTDSFA DALASIVNFI
AIRYAIVPAD QDHRYGHGKA EPLAALAQSA FILGSAFLLL FHGGDRLINP TPINHAMVGV
VVSVVAIVLT FALVLLQKRA LAETSSTVVE ADALHYKSDL FLNAAVLLAL VLSQYGWWWA
DGLFAILIAI FIGQQAIGLG YRSIQSLLDR ELDADTRLTI VELIQEDPRV NGFHDLRTRE
SGKTTFIQCH LELDGDLTLR DAHTIADETE ERLRNAFDHA EVIIHQDPV
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