| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0280 |
|---|
| Symbol | |
|---|
| ID | 5610579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 316789 |
|---|
| End bp | 317295 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640931106 |
|---|
| Product | protein of unknown function, Spy-related |
|---|
| Protein accession | YP_001472021 |
|---|
| Protein GI | 157373421 |
|---|
| COG category | [N] Cell motility
[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3678] P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000525037 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000829203 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAA ATACATTGAA AGCAGGGCTA CTTGCCATCG TGGCCGGTAC CGCGTTATTG
ACTACAAGCG TTTATGCAGA ACAGCAGACT GGATGCCAAG ATAGTGGCTA CCATATGAAA
GGTGACAGAA TGGGGCATCA TAATGGTGGT ATGAAGAGTG CTATGAAGAA GATGTTCAGA
GGCTTAGATC TGACCGATGA GCAGCGCACC GAAATTAAAA CATTGATGAA AGCACAGAAA
GATTCAATGC AGGGCAGCCG TCCAACGAGT GATGAACGCC AGGCACATAA AACAGAGATG
CTTGCCTTGA TCACTGCAGA TAGTTTCGAT GAATCTCAAG TAAAACTACT CATGCAGCAA
AAGCATGAGA AGCGTCAAGA TAAAGCCGTA GGTATGCTTA AAGTGCAGAA TGAGATATAT
AAGCTACTGA CTCCTGAGCA GCAAGTTAAG TTTAAGGAGA ACTTCGAAAA GGGGCATTCT
CGTCACGAAC GTAAAGGTGA GCGATAG
|
|---|
| Protein sequence | MKANTLKAGL LAIVAGTALL TTSVYAEQQT GCQDSGYHMK GDRMGHHNGG MKSAMKKMFR
GLDLTDEQRT EIKTLMKAQK DSMQGSRPTS DERQAHKTEM LALITADSFD ESQVKLLMQQ
KHEKRQDKAV GMLKVQNEIY KLLTPEQQVK FKENFEKGHS RHERKGER
|
|---|
| |