| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0275 |
|---|
| Symbol | |
|---|
| ID | 5611298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 311595 |
|---|
| End bp | 312758 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640931101 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001472016 |
|---|
| Protein GI | 157373416 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.450177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000113069 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA GTATATTTTC AGGAAGACTT AGTTTAGTTG GAACCGCTGT AGTTGTTGCC
TTAAGTGCCC CATGTTCGAC AGCACAGGCT GGAGATACAG AGTTCAAATT TGGTGGATAT
GTAAAAACGG ACGTCATGTT CAGTGATTAC AGCAATGGTG CACCGGGTTC AGGGGCCATT
TCCAGACAGT TTTATGTGCC AGGTGCTATT TATGGCGCAG AGGGTAATGG CGAGCAAGTT
GTCGACTTTC AGGCCCGCGA GTCACGTTTT AACTTCAAAA CCAGTACAAA TCTTGATGGT
CATAAGTTAA GTGGATTTAT CGAACTTGAT TTCATGACCC ACGCAGACGG TAATGAGCGT
GTTTCAAATA GTTACTCTCC TCGTATTCGT CATGCAATCG TTAGTTTCGA TAACTGGACA
ATAGGTCAGA CCTGGAGTAC GTTCCAAAAC CCTGGCGCGC TTCCTGAGAA CTTAGATTTT
GTCGGCGCGG CTGAAGGTAC GCCGTTTGTT CGTCAGTCTA TGGTTCGTTA TACCAATGGT
GGCTTCCAGT TTGCGGTAGA GAACCCAGAG ACCACGGTGA CTCCAAACGG TGGCGGTGCT
CGTATTACTA GCGGCAGTGG CATGGTACCG GATTTTGTTG CACGTTATAA TTTCAAAACT
GAAGGTGGCG CTAAGTTCAC TGTTGCCGGT TTAGCGAGAC AGCTGAACAT TGAGCAAGGT
GATCTGGATA CTCAGGAAAT GGGTTACGGT GTTAGCTTAA CTGGTGTCAT TCCGGTTGGT
AGTGATGATA TCAAACTTTC AGCGACGGTT GGTGAGGGTA TGGGCCGCTA TATGGCGCTC
AACTATGCTA ATGCTGGTGT CTTAAACAGT GATGGTGATA TTGAGACCAT TAGCTCTTAC
GGTGGTTTTG CCTCATATCG TCATTGGTGG AATGATAAGT TGCGCTCAAG TTTCACCGTT
TCAGGTTTTA AGGCCGATAA TGATGTCGCG TTAACGGGTG GAGCAGTTAA TGAAGAGTCG
TACTCTGGTT ATGTGAACTT ACTCTATTCA CCGGTTAAGC CTTTGACCGT TGGTGTTGAG
TACATGTATG CAGAAAACAC GAAGCAAAAT GGCGATAGCG GAGAGTTAAA TCGAGTGATT
TTCTCTGTTA AATATGTGCT TTAA
|
|---|
| Protein sequence | MKNSIFSGRL SLVGTAVVVA LSAPCSTAQA GDTEFKFGGY VKTDVMFSDY SNGAPGSGAI
SRQFYVPGAI YGAEGNGEQV VDFQARESRF NFKTSTNLDG HKLSGFIELD FMTHADGNER
VSNSYSPRIR HAIVSFDNWT IGQTWSTFQN PGALPENLDF VGAAEGTPFV RQSMVRYTNG
GFQFAVENPE TTVTPNGGGA RITSGSGMVP DFVARYNFKT EGGAKFTVAG LARQLNIEQG
DLDTQEMGYG VSLTGVIPVG SDDIKLSATV GEGMGRYMAL NYANAGVLNS DGDIETISSY
GGFASYRHWW NDKLRSSFTV SGFKADNDVA LTGGAVNEES YSGYVNLLYS PVKPLTVGVE
YMYAENTKQN GDSGELNRVI FSVKYVL
|
|---|
| |