Gene Ssed_0274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0274 
Symbol 
ID5609629 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp310954 
End bp311307 
Gene Length354 bp 
Protein Length117 aa 
Translation table11 
GC content42% 
IMG OID640931100 
Producttetraheme cytochrome c 
Protein accessionYP_001472015 
Protein GI157373415 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00010475 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTAAAT TGAAAGCGGT ATTGGCGCTA ACATTAGGTT GCCTATTAAC ACTGTCTGTA 
CAGGCTGTTG AAGTACGTGA CCACCACAAA GAAGTGATCG GAAAGGATTG TAAGACATGT
CACGACAATG GCATTAAACA ATTTCCGTCA GATCAATCAT GTTTGCAATG TCATGATGTT
GATGATCTAG CAGAGCAGAC GGCTCGAAAT GAAGAAGACA AGTGGCAAAA CCCACACAAC
AACTTGCACT ATGGCAAAGA GTTACCTTGC CAAGAGTGTC ATGGTGAACA CCAGCCTAAA
CAGCCTATGT GCAACAACTG TCATACTTTT AAGTTTGATA AGCATAAGCA GTAG
 
Protein sequence
MIKLKAVLAL TLGCLLTLSV QAVEVRDHHK EVIGKDCKTC HDNGIKQFPS DQSCLQCHDV 
DDLAEQTARN EEDKWQNPHN NLHYGKELPC QECHGEHQPK QPMCNNCHTF KFDKHKQ