| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0268 |
|---|
| Symbol | |
|---|
| ID | 5614220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 301643 |
|---|
| End bp | 303196 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640931094 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472009 |
|---|
| Protein GI | 157373409 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00938119 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGC AGAAAAAATT TGCGCAAATC GTTAGCGACC CAAGGCTGTC CCCAAAGCAA
AAATCGAACT ACTTAGCCTT AGAGGCCGAT GCAAGTCTAC CTTATCTCAC TATTTCAAAG
GCCGTTACTC AGGCCATGAG CACAGGTATT ATCTGCGATA TGTTTGAAGG CAATGCGCCA
TTCAAACCCC GTTACGTTTT GCCCGACTAC GCTAAATTTT TGCAACAAGG ATCGGAATAT
CTGGAACTGC AAGCCCCTCA GGATCTGGAT GAAGCACTCA ACGCATTAAC CATCATCTAT
CACCACGTTC CCTCTGTAAC CAATATCCCG GTTTATCTGG GGCAGTTGGA TGAGATCCTG
ATGCCTTTCG TCGATGGACT GGATGAAGAT GTCGTCTACC GAAAATTAAA ACTCTTCTGG
ATCATGCTCG ACCGTACGCT TCCCGATGCC TTTATGCATG TAAACATAGG GCCGAGCGAC
AATATCGTCT GTCGAACCAT TCTAAGAGTG GATGCTGAAC TTAAGCAGGT CGCACCGAAC
CTGACCTTTA TGTACGATCC CGATATTACA CCGGATGCGT TATTGCAAGT TGCAGCGAGC
AACATCTGTG AATGCAGCAA GCCGCATATC GCCAACTACC CTATTCACAA AAGCGCTTAT
GACAAACAGG GGTTCGGGAT TGTAAGCTGT TATAACTCAT TACCTTTAGC GGGTGGCGCC
AATACCTTAG TGCGCCTCAA CCTTAAAGAG GTCGCGCTTA AAGCCGACAA CATCGATAAC
TTCTTTGCTC ATACCTTGCC CCATTATTGC CAGCTCACTT ATGAACTGAT CGAGGCTCGT
AGCAAATACC TACACGAAGA ATCACACTTC TTCGATAGTT TTCTGGTCAA AGAGGCACTA
ATTGAAGAGC AGAGGTTTGC ACCTATGTTC GGTATTTACG GCATGGCGGA AGCGGTTAAC
ATATTACTGG GTAACCCGGA ATTATGTGAG ACGGCATCTG AGAAGCCGAG TAAGCACTAC
GGTCACAGCA AGGCTGCGAA TGAGTTAGGC CATCGAATCT CAGCCGCGCT GGATAGCATA
GTAAAATCGA CACCTGTCAC CTATGGCTAC CATGGGCGAG CGCTTCTGCA TTCTCAGGGG
GGAATAAGCC TGGATATCGA CGTGACTCCC GGTGTGCGGA TCCCTTATGG TACCGAGCCC
GATCCTATAT CCCATGTGCG GGCATTAGCC GAACATCACC AGTATTATAC TTCCGGCATC
AGCGATATTT TGACTATTGA TGAGACGGTA AAATCGAACC CTGAAGCCAT GTACCAACTG
TGCAAAGGGA CGCTGAGCCT AGGTTTTCGT GAGTTTACCG CGAATGTCGC CTCTAACGAC
TTAATCCGGG TCACAGGCTA CATGATTAAA TTATCTGATA TCGCTGACTT TAAACGGCAA
GGCTCCCGTA CCAATACCAC AGGTTTAGGA GCGGAAGCGG CGGCCAATAC CGGGATTTTA
AATCGCAAAC CAAGAGTCAC GAGTCATGAA CAATCGCCTG TCTACGCTAA GTAA
|
|---|
| Protein sequence | MTLQKKFAQI VSDPRLSPKQ KSNYLALEAD ASLPYLTISK AVTQAMSTGI ICDMFEGNAP
FKPRYVLPDY AKFLQQGSEY LELQAPQDLD EALNALTIIY HHVPSVTNIP VYLGQLDEIL
MPFVDGLDED VVYRKLKLFW IMLDRTLPDA FMHVNIGPSD NIVCRTILRV DAELKQVAPN
LTFMYDPDIT PDALLQVAAS NICECSKPHI ANYPIHKSAY DKQGFGIVSC YNSLPLAGGA
NTLVRLNLKE VALKADNIDN FFAHTLPHYC QLTYELIEAR SKYLHEESHF FDSFLVKEAL
IEEQRFAPMF GIYGMAEAVN ILLGNPELCE TASEKPSKHY GHSKAANELG HRISAALDSI
VKSTPVTYGY HGRALLHSQG GISLDIDVTP GVRIPYGTEP DPISHVRALA EHHQYYTSGI
SDILTIDETV KSNPEAMYQL CKGTLSLGFR EFTANVASND LIRVTGYMIK LSDIADFKRQ
GSRTNTTGLG AEAAANTGIL NRKPRVTSHE QSPVYAK
|
|---|
| |