| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0257 |
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| Symbol | |
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| ID | 5610630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 290669 |
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| End bp | 292780 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931083 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001471998 |
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| Protein GI | 157373398 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCGTT GGTCTTATTT ATTATCTAAG CTAAGTTCTG ACAGACCGAG TCTGTCTCAG
AGACTTCAGG CTTGGCAGTT GGAGCCCAAC GCTCTCCCTC TGGCCATCAT CCAAGGTTAC
CATTTTATCG GTGCCAACCC ACTTACGCTC TCCTACTTTC AGACTCAAAC GGATAACTTT
GTAAACGCCA CCCCCTACGA CTTTTCGCCC CGCATTCAAT CTTCGGGTAG AAACAGTATT
GAATATGCCC AGCAGATGAT GCGCCACGCA CTAGAGGGCG ACGTCATCGA ATTCAACTGG
CTGCACTTGA GCCAGCAGGG CAGAGAACTC CCCACCAGGG TATCCCTGTT TCCGTTTGAA
TTCGAAGGCA GTCCGGTCAT TTTGGCAATG TTCGAGCCAT CAAATCGACG CAGCCGAAGC
AGAGAAAGTG CTAATAATGG CTTCGATATG TTACCTAAAG AGCTGTTGTC TATTACGTTA
GAAGATAGCG CAGAGGCGGC GTACATCACA GATGCTGAAC ATCGAATTAT CGCTGTTAAT
AAGGCGATGT GTCGTATCAG CGGTTACAGC GCCGACCAAC TACTGCATAA GAATGCAGAG
GTCATCGACC TTAAGAGACA TACAGCCGCA GAGGAGATGG AACACAATAA CGCGCTCGAA
GAACGAGGGA ATTGGCAAGG CGAAGTGTGG AAACAGAGAT CCGATGGTAC CGAATTCCCC
GCCTGGAAGA GTTGCCGAAA AATTCTCGCT GAGGAGAGAG TCTACTATGT CACTATTTTC
AGTGATATCA GTACCAAGAA GAAACTGGAA GCAAAGCTCA CTGAGCAGGC CATGTTTGAC
ACGCTCACGG GCTTACCCAA CAGGCACCAT CTAAAGTTAT TACTGAATCA GGCACTGCAA
GAGATCAAAG AAACCCCGGG AAAAATGGGT GCCCTGATGT TTTTGGATCT CAATGGCTTC
AAAAACATTA ACGATTGTTT TGGTCATGCC ACCGGCGATA AGGTATTGCA GCTGGTCTCC
GCTAGATTAG AAGCAAGCTG TATTGAAAAA GCCGATATTG CCAGGCTCGG GGGAGATGAG
TTTACTCTGG TTTTAAGAGA CTGTAACGGT CATCAAGAGG TAGAGGATAT CTCTCAGCAG
ATAATGTCTC TGTTTGAGGC ACCATTTGAG ATCGATGATC AGAAGCTATA CCTGGGAACC
AGCATAGGCA TAGCACTATT TCCGGAACAC AGCTCAGAAG CCAATAAGCT TCTCAGCCTT
GCCGATACTG CTATGTATAG TGCTAAACAG AGCCCTGAAC ACGTGCTCTT TTACAACAAC
TCGATGCATG AAGAAGCTGA ACAAAAGCTG ACAATACTCA GTGAACTTCG CCACGCCCAT
AACCTTAAGC AATTCAGTCT CGCCTATCAG GTTATCGTGA ATCTGGAGTG TAACTCGGTT
ATTGGTGCCG AAGCCCTGCT TCGCTGGCAG AAGCCCGATG GCGAAATACT CAACGCCACC
GATTTCGTGC CCCTACTGGA AGAGGCCGGA CTGCTTATCA CCATAGGACA GTGGGTGCTA
AAACAAGCCT GCCTGCAAGT CGCAACGTGG CGTACTCAAC ATGCTCCGGA TCTAAAAGCC
TGTGTCAACG TCTCGCCTAT GCAGTTAGAG CACCCTGACT TTGTCCAACA AGTCACTGAA
GCTCTGACTT ACAGCCAGTT ACCTGCGAAC GCCTTAGTGC TCGAGATCAC CGAGTTGGCA
CTGCTCAGAC AACCCCAAAG AGTCAAAAAG ACCTTAACCT TACTAAAGAG CAAGGGCATA
AGCATCGCAA TCGATGATTT TGGCGCAGGC CTGTCATCAC TCAGTAAGTT AGGTAGTCTG
CCTATCGACA GCTTGAAAAT TGATGCCGGT TTTGCCCATA GATTGAGTGA ACCTCAAGGA
AAAGAGCTCT GCCAGGCCAT GATAAAGCTT GCGCAAGCAC TGGATATCAG CTTTGTCGTA
GAGGGTATCG AAACCAAGCA GCAAAAAGAG ATATTAAAGA ATATGGGCAA AGGCTTTGGG
CAGGGCTACT TCTTCGGCCA TCCGAAAGAG GCTGCCAGAT TCACCCCTGA AAACTTTTCG
ACCTATAACT AA
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| Protein sequence | MDRWSYLLSK LSSDRPSLSQ RLQAWQLEPN ALPLAIIQGY HFIGANPLTL SYFQTQTDNF
VNATPYDFSP RIQSSGRNSI EYAQQMMRHA LEGDVIEFNW LHLSQQGREL PTRVSLFPFE
FEGSPVILAM FEPSNRRSRS RESANNGFDM LPKELLSITL EDSAEAAYIT DAEHRIIAVN
KAMCRISGYS ADQLLHKNAE VIDLKRHTAA EEMEHNNALE ERGNWQGEVW KQRSDGTEFP
AWKSCRKILA EERVYYVTIF SDISTKKKLE AKLTEQAMFD TLTGLPNRHH LKLLLNQALQ
EIKETPGKMG ALMFLDLNGF KNINDCFGHA TGDKVLQLVS ARLEASCIEK ADIARLGGDE
FTLVLRDCNG HQEVEDISQQ IMSLFEAPFE IDDQKLYLGT SIGIALFPEH SSEANKLLSL
ADTAMYSAKQ SPEHVLFYNN SMHEEAEQKL TILSELRHAH NLKQFSLAYQ VIVNLECNSV
IGAEALLRWQ KPDGEILNAT DFVPLLEEAG LLITIGQWVL KQACLQVATW RTQHAPDLKA
CVNVSPMQLE HPDFVQQVTE ALTYSQLPAN ALVLEITELA LLRQPQRVKK TLTLLKSKGI
SIAIDDFGAG LSSLSKLGSL PIDSLKIDAG FAHRLSEPQG KELCQAMIKL AQALDISFVV
EGIETKQQKE ILKNMGKGFG QGYFFGHPKE AARFTPENFS TYN
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