| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0243 |
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| Symbol | |
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| ID | 5614201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 278333 |
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| End bp | 279274 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931069 |
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| Product | polysulphide reductase, NrfD |
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| Protein accession | YP_001471984 |
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| Protein GI | 157373384 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
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| TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCCAT TTCACTTTGA CGGCCTTGTC TGGCATTGGC CAATTGCCAT CTATCTGTTT
TTGGCTGGAG TCTCCGCCGG AGCTATAACT TTTGCCATAT TACTTAAGCA TTTTAAGCTG
GGTAATAACG CCTATAAATC CGGTTTCATT CAGGCCGCTT GTCTCATCGC TCCCTTATCA
GTCTTCGCTG GGCTGGGTAT CTTGGTGCTG GATCTCACCA AGCCATTCGA TTTTTGGAAG
ATCTTGGTTT TTTACAATGG GACTTCAGTG ATGTCTGTCG GCGTTGCCGT ACTGATGATC
TATCAACTGA TCCTCTTTGC CTGGCTAATC TGTGTATTTA AAGAGCCAGT ATTGAATTGG
TGTCATGGTC GCTGGCCTCT GGTTAACCGG TTATTGAGTG CTTTGGCTAA GCATGAGCCG
AGCATTACCG GTTTTTTGAC TATTCTCGCG CTTTCTCTGG GGGCTTATAC TGGCTTCCTG
CTCTCTGCGC TGACCACCTA TCCAATGCTG AACAATCCGG TATTGCCCTT ACTCTTCTTG
ATCTCCGGAC TTTCTTCGGG TGCCGCAGGT ACCCTGCTAG GTGGTGTATT GCTTAAGGGT
AACCCTGACG GTAAAGAGGT GCACTTCATA CATAACATAG AGATCCCGAT CATCTTAGTG
GAGCTGGTGC TGCTGTTTAC TTTCTTCATT GGACTCATCA TCTCGGGGGG CCAAAGTAAA
ATCGCTGCCC TGACTGCTAT AGGTGAAGGT TTTTGGGGCT GGGTATTCTG GGGAGGCATA
ATCATTGTGG GCCTAAGCTT ACCACTGGCA TTCAATCTCT TCATGAAGGC CTCTTCGAAG
CGTAAATTCT CCTATGTGGC TATTACCGCC AGTTGTAGCC TGATTGGGGT ATTTCTTCTG
CGTAATTTCA TTCTGTATAC CGGACAGATG ACTGTTGCTT AA
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| Protein sequence | MSPFHFDGLV WHWPIAIYLF LAGVSAGAIT FAILLKHFKL GNNAYKSGFI QAACLIAPLS
VFAGLGILVL DLTKPFDFWK ILVFYNGTSV MSVGVAVLMI YQLILFAWLI CVFKEPVLNW
CHGRWPLVNR LLSALAKHEP SITGFLTILA LSLGAYTGFL LSALTTYPML NNPVLPLLFL
ISGLSSGAAG TLLGGVLLKG NPDGKEVHFI HNIEIPIILV ELVLLFTFFI GLIISGGQSK
IAALTAIGEG FWGWVFWGGI IIVGLSLPLA FNLFMKASSK RKFSYVAITA SCSLIGVFLL
RNFILYTGQM TVA
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